Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

The pH-Triggered Conversion of the PrPc to PrPsc

(2013) Guo-Ping Zhou et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

A Multilabel Model Based on Chou’s Pseudo–Amino Acid Composition for Identifying Membrane Proteins with Both Single and Multiple Functional Types

(2013) Chao Huang et al.   JOURNAL OF MEMBRANE BIOLOGY

iCDI-PseFpt: Identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints

(2013) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

(2013) Bin Liu et al.   Molecular Informatics

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Predicting Antibacterial Peptides by the Concept of Chou's Pseudo-amino Acid Composition and Machine Learning Methods

(2013) Maede Khosravian et al.   PROTEIN AND PEPTIDE LETTERS

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins

(2013) Yan Xu et al.   PeerJ

Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou’s pseudo amino acid composition

(2012) Yen-Kuang Chen et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach

(2012) Hassan Mohabatkar et al.   Medicinal Chemistry

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

Remote protein homology detection and fold recognition using two-layer support vector machine classifiers

(2011) Hilmi M. Muda et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Protein remote homology detection based on auto-cross covariance transformation

(2011) Xuan Liu et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

(2011) Loris Nanni et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein–protein interaction mechanism

(2011) Guo-Ping Zhou   JOURNAL OF THEORETICAL BIOLOGY

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding

(2011) Iain Melvin et al.   PLoS Computational Biology

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Graphic Rule for Drug Metabolism Systems

(2010) Kuo-Chen Chou   CURRENT DRUG METABOLISM

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Insights from investigating the interactions of adamantane-based drugs with the M2 proton channel from the H1N1 swine virus

(2009) Jing-Fang Wang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

(2009) Bin Liu et al.   BMC BIOINFORMATICS

COMPASS server for homology detection: improved statistical accuracy, speed and functionality

(2009) R. I. Sadreyev et al.   NUCLEIC ACIDS RESEARCH

Protein function annotation by homology-based inference

(2009) Yaniv Loewenstein et al.   GENOME BIOLOGY

Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection

(2008) Theodoros Damoulas et al.   BIOINFORMATICS

Word correlation matrices for protein sequence analysis and remote homology detection

(2008) Thomas Lingner et al.   BMC BIOINFORMATICS

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

(2008) Bin Liu et al.   BMC BIOINFORMATICS

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY