Similarity computation strategies in the microRNA-disease network: a survey

LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data

(2015) Qinghua Jiang et al.   BMC GENOMICS

Exploratory Predicting Protein Folding Model with Random Forest and Hybrid Features

(2015) Xuewei Zhao et al.   Current Proteomics

Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit

(2015) Ye Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Walking on multiple disease-gene networks to prioritize candidate genes

(2015) Rui Jiang   Journal of Molecular Cell Biology

Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods

(2015) Quan Zou et al.   Biomed Research International

Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach

(2015) Bin Liu et al.   PLoS One

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts

(2014) Qian Liu et al.   BMC BIOINFORMATICS

An overview of SNP interactions in genome-wide association studies

(2014) P. Li et al.   Briefings in Functional Genomics

Role of lncRNAs in health and disease--size and shape matter

(2014) V. Mohanty et al.   Briefings in Functional Genomics

A Discussion of MicroRNAs in Cancers

(2014) Shi Hua et al.   Current Bioinformatics

Review of Protein Subcellular Localization Prediction

(2014) Zhen Wang et al.   Current Bioinformatics

A challenge for miRNA: multiple isomiRs in miRNAomics

(2014) Li Guo et al.   GENE

Prediction of disease-related microRNAs by incorporating functional similarity and common association information

(2014) K. Han et al.   GENETICS AND MOLECULAR RESEARCH

PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation

(2014) Bin Liu et al.   Molecular Informatics

A Computational Framework to Infer Human Disease-Associated Long Noncoding RNAs

(2014) Ming-Xi Liu et al.   PLoS One

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction

(2014) X. Zhang et al.   RNA

Approaches for Recognizing Disease Genes Based on Network

(2014) Quan Zou et al.   Biomed Research International

Connect the dots

(2013) Yifei Li et al.   Autophagy

Briefing in family characteristics of microRNAs and their applications in cancer research

(2013) Qicong Wang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Inferring the soybean (Glycine max) microRNA functional network based on target gene network

(2013) Yungang Xu et al.   BIOINFORMATICS

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes

(2013) Hongbo Shi et al.   BMC Systems Biology

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

miRClassify: An advanced web server for miRNA family classification and annotation

(2013) Quan Zou et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Computational Analysis of miRNA Target Identification

(2013) Leyi Wei et al.   Current Bioinformatics

BinMemPredict: a Web Server and Software for Predicting Membrane Protein Types

(2013) Quan Zou et al.   Current Proteomics

Selected isomiR expression profiles via arm switching?

(2013) Li Guo et al.   GENE

Identifying Multi-Functional Enzyme by Hierarchical Multi-Label Classifier

(2013) Quan Zou et al.   Journal of Computational and Theoretical Nanoscience

Hierarchical Identification of MicroRNA Families for Biomedical Applications

(2013) Ke Chen et al.   Journal of Computational and Theoretical Nanoscience

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

(2013) Bin Liu et al.   Molecular Informatics

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

(2013) Chen Lin et al.   PLoS One

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Inferring the Perturbed microRNA Regulatory Networks in Cancer Using Hierarchical Gene Co-Expression Signatures

(2013) Jin Gu et al.   PLoS One

Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network

(2013) Y Wang et al.   Cell Death & Disease

An Approach for Identifying Cytokines Based on a Novel Ensemble Classifier

(2013) Quan Zou et al.   Biomed Research International

Genome-wide screen for aberrantly expressed miRNAs reveals miRNA profile signature in breast cancer

(2012) Li Guo et al.   MOLECULAR BIOLOGY REPORTS

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

A Global Characterization and Identification of Multifunctional Enzymes

(2012) Xian-Ying Cheng et al.   PLoS One

Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier

(2012) Xing Chen et al.   PLoS One

Towards the understanding of microRNA and environmental factor interactions and their relationships to human diseases

(2012) Chengxiang Qiu et al.   Scientific Reports

Dissection of human MiRNA regulatory influence to subpathway

(2011) X. Li et al.   BRIEFINGS IN BIOINFORMATICS

Novel representation of RNA secondary structure used to improve prediction algorithms

(2011) Q. Zou et al.   GENETICS AND MOLECULAR RESEARCH

Recurrent Neural Network for Non-Smooth Convex Optimization Problems With Application to the Identification of Genetic Regulatory Networks

(2011) Long Cheng et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

The Implications of Relationships between Human Diseases and Metabolic Subpathways

(2011) Xia Li et al.   PLoS One

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

Biological functions of microRNAs: a review

(2010) Yong Huang et al.   JOURNAL OF PHYSIOLOGY AND BIOCHEMISTRY

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Predicting RNA secondary structure based on the class information and Hopfield network

(2009) Quan Zou et al.   COMPUTERS IN BIOLOGY AND MEDICINE

DIANA-microT web server: elucidating microRNA functions through target prediction

(2009) M. Maragkakis et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One