Application of learning to rank to protein remote homology detection

Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis

(2015) Bin Liu et al.   MOLECULAR GENETICS AND GENOMICS

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts

(2014) Qian Liu et al.   BMC BIOINFORMATICS

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

(2013) Bin Liu et al.   Molecular Informatics

Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

(2013) Chen Lin et al.   PLoS One

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

A Short Introduction to Learning to Rank

(2011) Hang LI   IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding

(2011) Iain Melvin et al.   PLoS Computational Biology

A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation

(2009) Qiwen Dong et al.   BIOINFORMATICS

AllerHunter: A SVM-Pairwise System for Assessment of Allergenicity and Allergic Cross-Reactivity in Proteins

(2009) Hon Cheng Muh et al.   PLoS One

RANKPROP: a web server for protein remote homology detection

(2008) I. Melvin et al.   BIOINFORMATICS

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

(2008) Bin Liu et al.   BMC BIOINFORMATICS