PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation
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Title
PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation
Authors
Keywords
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Journal
Molecular Informatics
Volume 34, Issue 1, Pages 8-17
Publisher
Wiley
Online
2014-09-27
DOI
10.1002/minf.201400025
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Note: Only part of the references are listed.- Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences
- (2014) Tao Yang et al. BMC BIOINFORMATICS
- PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets
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- (2013) Xuan Xiao et al. ANALYTICAL BIOCHEMISTRY
- Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
- (2013) Bin Liu et al. BIOINFORMATICS
- propy: a tool to generate various modes of Chou’s PseAAC
- (2013) Dong-Sheng Cao et al. BIOINFORMATICS
- An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis
- (2013) Chuanxin Zou et al. BMC BIOINFORMATICS
- QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions
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- iCDI-PseFpt: Identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints
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- (2013) Zohre Hajisharifi et al. JOURNAL OF THEORETICAL BIOLOGY
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- Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation
- (2013) Bin Liu et al. Molecular Informatics
- Evaluation of methods for modeling transcription factor sequence specificity
- (2013) Matthew T Weirauch et al. NATURE BIOTECHNOLOGY
- iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
- (2013) Wei Chen et al. NUCLEIC ACIDS RESEARCH
- iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition
- (2013) Yan Xu et al. PLoS One
- iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins
- (2013) Yan Xu et al. PeerJ
- PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions
- (2012) Pufeng Du et al. ANALYTICAL BIOCHEMISTRY
- DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest
- (2012) K. Krishna. Kumar et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
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- (2012) Yao Chi Chen et al. NUCLEIC ACIDS RESEARCH
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- (2012) Lei Chen et al. PLoS One
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- (2012) Wei Chen et al. PLoS One
- Prediction of Apoptosis Protein Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of Pseudo Amino Acid Composition
- (2012) Krishna Kumar Kandaswamy et al. PROTEIN AND PEPTIDE LETTERS
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- (2012) Lele Hu et al. PROTEIN AND PEPTIDE LETTERS
- Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information
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- Predicting protein folding rates using the concept of Chou's pseudo amino acid composition
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- OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition
- (2011) Jian-Ding Qiu et al. JOURNAL OF MOLECULAR GRAPHICS & MODELLING
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- (2011) Hassan Mohabatkar et al. JOURNAL OF THEORETICAL BIOLOGY
- iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
- (2011) Kuo-Chen Chou et al. Molecular BioSystems
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- (2011) Kuo-Chen Chou et al. PLoS One
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- (2011) Wei-Zhong Lin et al. PLoS One
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- (2011) Yanfeng Zhang et al. PROTEIN AND PEPTIDE LETTERS
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- (2010) Sitanshu Sekhar Sahu et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
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- (2010) Lezheng Yu et al. JOURNAL OF THEORETICAL BIOLOGY
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- DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues
- (2010) Pemra Ozbek et al. NUCLEIC ACIDS RESEARCH
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- (2010) Jian-Ding Qiu et al. PROTEIN AND PEPTIDE LETTERS
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- (2010) Hassan Mohabatkar PROTEIN AND PEPTIDE LETTERS
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- (2009) Jian-Ding Qiu et al. ANALYTICAL BIOCHEMISTRY
- Exploiting three kinds of interface propensities to identify protein binding sites
- (2009) Bin Liu et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
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- (2008) Guang-Ya Zhang et al. JOURNAL OF THEORETICAL BIOLOGY
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- (2008) Hao Lin JOURNAL OF THEORETICAL BIOLOGY
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- (2008) D.N. Georgiou et al. JOURNAL OF THEORETICAL BIOLOGY
- Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms
- (2008) Kuo-Chen Chou et al. Nature Protocols
- DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions
- (2008) Mu Gao et al. NUCLEIC ACIDS RESEARCH
- Using Chou’s pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
- (2008) Yong-Sheng Ding et al. PATTERN RECOGNITION LETTERS
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- (2008) Xiaoying Jian et al. PROTEIN AND PEPTIDE LETTERS
- Predicting Protein Subcellular Location Using Chous Pseudo Amino Acid Composition and Improved Hybrid Approach
- (2008) Feng-Min Li et al. PROTEIN AND PEPTIDE LETTERS
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