Integrated Sequence-Structure Motifs Suffice to Identify microRNA Precursors

MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features

(2011) Jiandong Ding et al.   BMC BIOINFORMATICS

PMirP: A pre-microRNA prediction method based on structure–sequence hybrid features

(2010) Dongyu Zhao et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm

(2010) Chih-Hung Hsieh et al.   BMC BIOINFORMATICS

Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)

(2010) Sumeet Agarwal et al.   BMC BIOINFORMATICS

Antagonistic role of hnRNP A1 and KSRP in the regulation of let-7a biogenesis

(2010) Gracjan Michlewski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures

(2010) M. Faller et al.   RNA

microPred: effective classification of pre-miRNAs for human miRNA gene prediction

(2009) Rukshan Batuwita et al.   BIOINFORMATICS

The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs

(2009) Michele Trabucchi et al.   NATURE

Prediction of novel microRNA genes in cancer-associated genomic regions—a combined computational and experimental approach

(2009) Anastasis Oulas et al.   NUCLEIC ACIDS RESEARCH

MicroRNA prediction with a novel ranking algorithm based on random walks

(2008) Y. Xu et al.   BIOINFORMATICS

Determinants of MicroRNA Processing Inhibition by the Developmentally Regulated RNA-binding Protein Lin28

(2008) Elena Piskounova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops

(2008) Gracjan Michlewski et al.   MOLECULAR CELL

Mapping and sequencing of structural variation from eight human genomes

(2008) Jeffrey M. Kidd et al.   NATURE