Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods

iORI-PseKNC: A predictor for identifying origin of replication with pseudo k-tuple nucleotide composition

(2015) Wen-Chao Li et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Using distances between Top-n-gram and residue pairs for protein remote homology detection

(2014) Bin Liu et al.   BMC BIOINFORMATICS

Prediction of disease-related microRNAs by incorporating functional similarity and common association information

(2014) K. Han et al.   GENETICS AND MOLECULAR RESEARCH

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation

(2014) Bin Liu et al.   Molecular Informatics

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

Current and Emerging Biomarkers of Cell Death in Human Disease

(2014) Kongning Li et al.   Biomed Research International

Approaches for Recognizing Disease Genes Based on Network

(2014) Quan Zou et al.   Biomed Research International

Connect the dots

(2013) Yifei Li et al.   Autophagy

Briefing in family characteristics of microRNAs and their applications in cancer research

(2013) Qicong Wang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information

(2013) Dariusz Mrozek et al.   BMC BIOINFORMATICS

Similarity-based methods for potential human microRNA-disease association prediction

(2013) Hailin Chen et al.   BMC Medical Genomics

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set

(2013) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

(2013) Bin Liu et al.   Molecular Informatics

A bagging SVM to learn from positive and unlabeled examples

(2013) F. Mordelet et al.   PATTERN RECOGNITION LETTERS

An Information-Theoretic Machine Learning Approach to Expression QTL Analysis

(2013) Tao Huang et al.   PLoS One

Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses

(2013) U. Martin Singh-Blom et al.   PLoS One

Prediction of Associations between OMIM Diseases and MicroRNAs by Random Walk on OMIM Disease Similarity Network

(2013) Hailin Chen et al.   TheScientificWorldJOURNAL

Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network

(2013) Y Wang et al.   Cell Death & Disease

PaGeFinder: quantitative identification of spatiotemporal pattern genes

(2012) J.-B. Pan et al.   BIOINFORMATICS

Dysregulated microRNAs in the pathogenesis and progression of cervical neoplasm

(2012) Tak-hong Cheung et al.   CELL CYCLE

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

Recurrent Neural Network for Non-Smooth Convex Optimization Problems With Application to the Identification of Genetic Regulatory Networks

(2011) Long Cheng et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

Genome-wide inferring gene–phenotype relationship by walking on the heterogeneous network

(2010) Yongjin Li et al.   BIOINFORMATICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

Thelet-7microRNA reduces tumor growth in mouse models of lung cancer

(2010) Aurora Esquela-Kerscher et al.   CELL CYCLE

Global Protein−Protein Interaction Network in the Human PathogenMycobacterium tuberculosisH37Rv

(2010) Yi Wang et al.   JOURNAL OF PROTEOME RESEARCH

MiRNA–miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features

(2010) Juan Xu et al.   NUCLEIC ACIDS RESEARCH

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery

(2009) Z. Du et al.   NUCLEIC ACIDS RESEARCH

ThemiR-17∼92cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma

(2009) Tamar Uziel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Truncation in CCND1 mRNA alters miR-16-1 regulation in mantle cell lymphoma

(2008) R. W. Chen et al.   BLOOD

Metrics for GO based protein semantic similarity: a systematic evaluation

(2008) Catia Pesquita et al.   BMC BIOINFORMATICS

Network-based global inference of human disease genes

(2008) Xuebing Wu et al.   Molecular Systems Biology

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One

Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis

(2008) Ugo Ala et al.   PLoS Computational Biology