An Information-Theoretic Machine Learning Approach to Expression QTL Analysis

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

Bayesian method to predict individual SNP genotypes from gene expression data

(2012) Eric E Schadt et al.   NATURE GENETICS

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Associations between Ionomic Profile and Metabolic Abnormalities in Human Population

(2012) Liang Sun et al.   PLoS One

Teamwork: Improved eQTL Mapping Using Combinations of Machine Learning Methods

(2012) Marit Ackermann et al.   PLoS One

Simulating systems genetics data with SysGenSIM

(2011) A. Pinna et al.   BIOINFORMATICS

Virtual CGH: an integrative approach to predict genetic abnormalities from gene expression microarray data applied in lymphoma

(2011) Huimin Geng et al.   BMC Medical Genomics

Design of a smart biomarker for bioremediation: A machine learning approach

(2011) P.T. Krishna Kumar et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Predicting triplet of transcription factor – mediating enzyme – target gene by functional profiles

(2011) Tao Huang et al.   NEUROCOMPUTING

Computational Analysis of HIV-1 Resistance Based on Gene Expression Profiles and the Virus-Host Interaction Network

(2011) Tao Huang et al.   PLoS One

Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA

(2011) Tao Huang et al.   PLoS One

Predicting Transcriptional Activity of Multiple Site p53 Mutants Based on Hybrid Properties

(2011) Tao Huang et al.   PLoS One

Classification and Analysis of Regulatory Pathways Using Graph Property, Biochemical and Physicochemical Property, and Functional Property

(2011) Tao Huang et al.   PLoS One

Mutual Information Analysis: a Comprehensive Study

(2010) Lejla Batina et al.   JOURNAL OF CRYPTOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Analysis of Protein Pathway Networks Using Hybrid Properties

(2010) Lei Chen et al.   MOLECULES

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks

(2010) Tao Huang et al.   PLoS One

A Unified 35-Gene Signature for both Subtype Classification and Survival Prediction in Diffuse Large B-Cell Lymphomas

(2010) Yu-Dong Cai et al.   PLoS One

Prediction of Deleterious Non-Synonymous SNPs Based on Protein Interaction Network and Hybrid Properties

(2010) Tao Huang et al.   PLoS One

Lessons from the DREAM2 Challenges

(2009) Gustavo Stolovitzky et al.   Annals of the New York Academy of Sciences

Detection and interpretation of expression quantitative trait loci (eQTL)

(2009) Jacob J. Michaelson et al.   METHODS

Genetic analysis of radiation-induced changes in human gene expression

(2009) Denis A. Smirnov et al.   NATURE

Mapping complex disease traits with global gene expression

(2009) William Cookson et al.   NATURE REVIEWS GENETICS

Prediction of Pharmacological and Xenobiotic Responses to Drugs Based on Time Course Gene Expression Profiles

(2009) Tao Huang et al.   PLoS One

The prediction of interferon treatment effects based on time series microarray gene expression profiles

(2008) Tao Huang et al.   Journal of Translational Medicine

Sex Specific Gene Regulation and Expression QTLs in Mouse Macrophages from a Strain Intercross

(2008) Jeffrey M. Bhasin et al.   PLoS One

Revealing the architecture of gene regulation: the promise of eQTL studies

(2008) Yoav Gilad et al.   TRENDS IN GENETICS