Using distances between Top-n-gram and residue pairs for protein remote homology detection

An Approach for Identifying Cytokines Based on a Novel Ensemble Classifier

(2013) Quan Zou et al.   Biomed Research International

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

Remote protein homology detection and fold recognition using two-layer support vector machine classifiers

(2011) Hilmi M. Muda et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Protein remote homology detection based on auto-cross covariance transformation

(2011) Xuan Liu et al.   COMPUTERS IN BIOLOGY AND MEDICINE

An Improved Profile-Level Domain Linker Propensity Index for Protein Domain Boundary Prediction.

(2011) Yanfeng Zhang et al.   PROTEIN AND PEPTIDE LETTERS

COMA server for protein distant homology search

(2010) Mindaugas Margelevičius et al.   BIOINFORMATICS

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

(2009) Anna Lobley et al.   BIOINFORMATICS

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

(2009) Bin Liu et al.   BMC BIOINFORMATICS

Exploiting three kinds of interface propensities to identify protein binding sites

(2009) Bin Liu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

COMPASS server for homology detection: improved statistical accuracy, speed and functionality

(2009) R. I. Sadreyev et al.   NUCLEIC ACIDS RESEARCH

webPRC: the Profile Comparer for alignment-based searching of public domain databases

(2009) B. W. Brandt et al.   NUCLEIC ACIDS RESEARCH

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection

(2008) A. R. Shah et al.   BIOINFORMATICS

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

(2008) Bin Liu et al.   BMC BIOINFORMATICS

Remote protein homology detection using recurrence quantification analysis and amino acid physicochemical properties

(2008) Yuchen Yang et al.   JOURNAL OF THEORETICAL BIOLOGY