Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea

Genotyping by sequencing for genomic prediction in a soybean breeding population

(2014) Diego Jarquín et al.   BMC GENOMICS

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly

(2014) Amit A Deokar et al.   BMC GENOMICS

An Integrated Genomic Approach for Rapid Delineation of Candidate Genes Regulating Agro-Morphological Traits in Chickpea

(2014) Maneesha S. Saxena et al.   DNA RESEARCH

Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea

(2014) Deepak Bajaj et al.   JOURNAL OF EXPERIMENTAL BOTANY

An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea

(2014) Alice Kujur et al.   MOLECULAR BREEDING

Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea

(2014) Deepa Jaganathan et al.   MOLECULAR GENETICS AND GENOMICS

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

A chromosomal genomics approach to assess and validate thedesiandkabulidraft chickpea genome assemblies

(2014) Pradeep Ruperao et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean

(2014) Humira Sonah et al.   PLANT BIOTECHNOLOGY JOURNAL

QTL Analysis of Kernel-Related Traits in Maize Using an Immortalized F2 Population

(2014) Zhanhui Zhang et al.   PLoS One

Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches

(2014) Mahendar Thudi et al.   PLoS One

Natural Allelic Diversity, Genetic Structure and Linkage Disequilibrium Pattern in Wild Chickpea

(2014) Maneesha S. Saxena et al.   PLoS One

Genetic analysis of single-locus and epistatic QTLs for seed traits in an adapted × nuña RIL population of common bean (Phaseolus vulgaris L.)

(2014) Fernando J. Yuste-Lisbona et al.   THEORETICAL AND APPLIED GENETICS

A major and stable QTL associated with seed weight in soybean across multiple environments and genetic backgrounds

(2014) Shin Kato et al.   THEORETICAL AND APPLIED GENETICS

Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects

(2014) Abhishek Bohra et al.   THEORETICAL AND APPLIED GENETICS

Genome sequence of mungbean and insights into evolution within Vigna species

(2014) Yang Jae Kang et al.   Nature Communications

A Saturated Genetic Linkage Map of Autotetraploid Alfalfa ( Medicago sativa L.) Developed Using Genotyping-by-Sequencing Is Highly Syntenous with the Medicago truncatula Genome

(2014) Xuehui Li et al.   G3-Genes Genomes Genetics

Genome Wide Association Mapping of Resistance in Soybean with a Genotyping-by-Sequencing Approach

(2014) Maxime Bastien et al.   Plant Genome

Marker-Assisted Backcrossing to Introgress Resistance to Fusarium Wilt Race 1 and Ascochyta Blight in C 214, an Elite Cultivar of Chickpea

(2014) R. K. Varshney et al.   Plant Genome

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

(2013) Rajeev K. Varshney et al.   BIOTECHNOLOGY ADVANCES

Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean

(2013) Safiullah M. Pathan et al.   CROP SCIENCE

Functionally Relevant Microsatellite Markers From Chickpea Transcription Factor Genes for Efficient Genotyping Applications and Trait Association Mapping

(2013) A. Kujur et al.   DNA RESEARCH

Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)

(2013) Murali Mohan Sabbavarapu et al.   EUPHYTICA

Genetic marker discovery, intraspecific linkage map construction and quantitative trait locus analysis of ascochyta blight resistance in chickpea (Cicer arietinum L.)

(2013) Amber Stephens et al.   MOLECULAR BREEDING

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

(2013) Mukesh Jain et al.   PLANT BIOTECHNOLOGY JOURNAL

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)

(2013) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce

(2013) Maria José Truco et al.   G3-Genes Genomes Genetics

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform

(2013) Manish Roorkiwal et al.   Plant Genome

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array

(2012) Laima Antanaviciute et al.   BMC GENOMICS

Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review

(2012) A. K. Jukanti et al.   BRITISH JOURNAL OF NUTRITION

Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes

(2012) R. K. Saxena et al.   DNA RESEARCH

High-Throughput SNP Discovery and Genotyping for Constructing a Saturated Linkage Map of Chickpea (Cicer arietinum L.)

(2012) R. Gaur et al.   DNA RESEARCH

Transcriptome sequencing of wild chickpea as a rich resource for marker development

(2012) Shalu Jhanwar et al.   PLANT BIOTECHNOLOGY JOURNAL

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

(2012) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

A High Resolution Genetic Map Anchoring Scaffolds of the Sequenced Watermelon Genome

(2012) Yi Ren et al.   PLoS One

Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato

(2012) Sung-Chur Sim et al.   PLoS One

Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers

(2012) Gaurav Agarwal et al.   PLoS One

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites

(2012) Yingjie Xiao et al.   THEORETICAL AND APPLIED GENETICS

EST-derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea

(2012) Shalu Choudhary et al.   THEORETICAL AND APPLIED GENETICS

Patterns of linkage disequilibrium and association mapping in diploid alfalfa (M. sativa L.)

(2012) Muhammet Sakiroglu et al.   THEORETICAL AND APPLIED GENETICS

Mapping QTL for resistance to botrytis grey mould in chickpea

(2011) Chetukuri Anuradha et al.   EUPHYTICA

Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components

(2011) Vincent Vadez et al.   MOLECULAR BREEDING

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Towards marker-assisted selection in pulses: a review

(2011) Jitendra Kumar et al.   PLANT BREEDING

Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers

(2011) Huihui Yu et al.   PLoS One

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing

(2011) Kranthi Varala et al.   PLoS One

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

(2011) A. Branca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon

(2011) Naxin Huo et al.   THEORETICAL AND APPLIED GENETICS

Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)

(2011) Neha Gujaria et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

(2010) David L Hyten et al.   BMC GENOMICS

Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.)

(2010) Awadhesh Pandit et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize

(2010) Y. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome

(2010) Spurthi N. Nayak et al.   THEORETICAL AND APPLIED GENETICS

Mapping a major gene for growth habit and QTLs for ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum

(2009) N. Aryamanesh et al.   EUPHYTICA

Genetic analysis of agronomic traits in a wide cross of chickpea

(2009) M.J. Cobos et al.   FIELD CROPS RESEARCH

Molecular mapping of wilt resistance genes in chickpea

(2009) S. J. M. Gowda et al.   MOLECULAR BREEDING

Association mapping of stigma and spikelet characteristics in rice (Oryza sativa L.)

(2009) Wen Gui Yan et al.   MOLECULAR BREEDING

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

(2009) W. Muchero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

A note on the evolution of kabuli chickpeas as shown by induced mutations in Cicer reticulatum Ladizinsky

(2008) Cengiz Toker   GENETIC RESOURCES AND CROP EVOLUTION

The marker SCK13603 associated with resistance to ascochyta blight in chickpea is located in a region of a putative retrotransposon

(2008) Marta Iruela et al.   PLANT CELL REPORTS