Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum ; Fabaceae), a crop species without a reference genome

(2012) Sarwar Azam et al.   AMERICAN JOURNAL OF BOTANY

EST-derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea

(2012) Shalu Choudhary et al.   THEORETICAL AND APPLIED GENETICS

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)

(2011) Alexandra M. Allen et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomic tools and germplasm diversity for chickpea improvement

(2011) Hari D. Upadhyaya et al.   Plant Genetic Resources-Characterization and Utilization

Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)

(2011) Mahendar Thudi et al.   PLoS One

SNP marker diversity in common bean (Phaseolus vulgaris L.)

(2011) Andrés J. Cortés et al.   THEORETICAL AND APPLIED GENETICS

Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)

(2011) Neha Gujaria et al.   THEORETICAL AND APPLIED GENETICS

Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea

(2010) Chrystel Deulvot et al.   BMC GENOMICS

Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome

(2010) Spurthi N. Nayak et al.   THEORETICAL AND APPLIED GENETICS

A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)

(2009) Rajeev K Varshney et al.   BMC GENOMICS

Development and implementation of high-throughput SNP genotyping in barley

(2009) Timothy J Close et al.   BMC GENOMICS

Mapping a major gene for growth habit and QTLs for ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum

(2009) N. Aryamanesh et al.   EUPHYTICA

Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species

(2009) Spurthi N. Nayak et al.   PLANT SCIENCE

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

(2009) W. Muchero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robust SNP genotyping by multiplex PCR and arrayed primer extension

(2008) Mohua Podder et al.   BMC Medical Genomics

Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea)

(2008) Luu M Cuc et al.   BMC PLANT BIOLOGY

Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)

(2008) Hari D Upadhyaya et al.   BMC PLANT BIOLOGY

Development of chickpea EST-SSR markers and analysis of allelic variation across related species

(2008) Shalu Choudhary et al.   THEORETICAL AND APPLIED GENETICS

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

(2008) David L. Hyten et al.   THEORETICAL AND APPLIED GENETICS