Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Single Nucleotide Polymorphism Discovery in Cultivated Tomato via Sequencing by Synthesis

(2012) John P. Hamilton et al.   Plant Genome

Single nucleotide polymorphism discovery in elite north american potato germplasm

(2011) John P Hamilton et al.   BMC GENOMICS

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

(2011) Martin W. Ganal et al.   PLoS One

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.)

(2011) Daniele Trebbi et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

(2010) David L Hyten et al.   BMC GENOMICS

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

(2010) Toshio Yamamoto et al.   BMC GENOMICS

Structural Differences in Chromosomes Distinguish Species in the Tomato Clade

(2010) L.K. Anderson et al.   CYTOGENETIC AND GENOME RESEARCH

SNP Discovery and Linkage Map Construction in Cultivated Tomato

(2010) K. Shirasawa et al.   DNA RESEARCH

Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato

(2010) Matthew D. Robbins et al.   JOURNAL OF EXPERIMENTAL BOTANY

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

(2010) M. Y. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Fluorescence in situ Hybridization in Sequencing the Tomato Genome

(2009) S.M. Stack et al.   CYTOGENETIC AND GENOME RESEARCH

Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery

(2009) Stéphane Deschamps et al.   MOLECULAR BREEDING

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

(2009) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Array-based high-throughput DNA markers for crop improvement

(2008) P K Gupta et al.   HEREDITY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE