Expansion of Capsicum annum fruit is linked to dynamic tissue-specific differential expression of miRNA and siRNA profiles

Identification and characterization of novel microRNAs for fruit development and quality in hot pepper (Capsicum annuum L.)

(2017) Zhoubin Liu et al.   GENE

Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

(2015) Ivett Baksa et al.   BMC GENOMICS

Evolution, functions, and mysteries of plant ARGONAUTE proteins

(2015) Han Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

MicroRNAs in Control of Plant Development

(2015) Chao Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Secondary siRNAs fromMedicago NB-LRRsmodulated via miRNA-target interactions and their abundances

(2015) Qili Fei et al.   PLANT JOURNAL

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs in plants: recent development and application for crop improvement

(2015) Ayushi Kamthan et al.   Frontiers in Plant Science

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Role of MicroRNAs in Biotic and Abiotic Stress Responses in Crop Plants

(2014) Rajesh Kumar   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation

(2014) Chao Gao et al.   PLANT BIOTECHNOLOGY JOURNAL

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs

(2014) Ricardo A. Chávez Montes et al.   Nature Communications

Genome-Wide Analysis of leafbladeless1-Regulated and Phased Small RNAs Underscores the Importance of the TAS3 ta-siRNA Pathway to Maize Development

(2014) Marcela C. Dotto et al.   PLoS Genetics

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Gene silencing in plants: A diversity of pathways

(2013) Angel Emilio Martínez de Alba et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

tasiRNAdb: a database of ta-siRNA regulatory pathways

(2013) Changqing Zhang et al.   BIOINFORMATICS

Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaea L.)

(2013) Huriye Yanik et al.   BMC PLANT BIOLOGY

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry

(2013) He Li et al.   PLANTA

The Hot Pepper (Capsicum annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper

(2013) Dong-Gyu Hwang et al.   PLoS One

ShortStack: Comprehensive annotation and quantification of small RNA genes

(2013) M. J. Axtell   RNA

Small RNAs and heritable epigenetic variation in plants

(2013) Donna M. Bond et al.   TRENDS IN CELL BIOLOGY

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

(2012) Jinhua Zuo et al.   BMC GENOMICS

Deep sequencing discovery of novel and conserved microRNAs in strawberry (Fragaria×ananassa)

(2012) Anjing Ge et al.   PHYSIOLOGIA PLANTARUM

The origin and effect of small RNA signaling in plants

(2012) Jean-Sébastien Parent et al.   Frontiers in Plant Science

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

(2011) Xiaozeng Yang et al.   BIOINFORMATICS

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

(2009) Rebecca A. Mosher et al.   NATURE

AGO1 Homeostasis Involves Differential Production of 21-nt and 22-nt miR168 Species by MIR168a and MIR168b

(2009) Hervé Vaucheret   PLoS One

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

MicroRNA detection by northern blotting using locked nucleic acid probes

(2008) Éva Várallyay et al.   Nature Protocols

A miRacle in plant development: Role of microRNAs in cell differentiation and patterning

(2008) D GARCIA   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY