Small RNAs in plants: recent development and application for crop improvement

Development of plants resistant to tomato geminiviruses using artificial trans-acting small interfering RNA

(2015) Archana Singh et al.   MOLECULAR PLANT PATHOLOGY

Molecular Mechanisms of RNA Interference

(2013) Ross C. Wilson et al.   Annual Review of Biophysics

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Delayed ripening and improved fruit processing quality in tomato by RNAi-mediated silencing of three homologs of 1-aminopropane-1-carboxylate synthase gene

(2013) Aarti Gupta et al.   JOURNAL OF PLANT PHYSIOLOGY

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

(2013) Yu-Chan Zhang et al.   NATURE BIOTECHNOLOGY

Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of theNramp6(Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance

(2013) Sonia Campo et al.   NEW PHYTOLOGIST

Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.)

(2013) CHUNHUA YANG et al.   PLANT CELL AND ENVIRONMENT

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress

(2013) Zhiyong Ni et al.   PLANT MOLECULAR BIOLOGY

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

RNA-induced silencing complex (RISC) Proteins PACT, TRBP, and Dicer are SRA binding nuclear receptor coregulators

(2013) A. D. Redfern et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14

(2013) Siyi Guo et al.   Nature Communications

Constitutive expression of the Corngrass1 microRNA in poplar affects plant architecture and stem lignin content and composition

(2012) Peter M. Rubinelli et al.   BIOMASS & BIOENERGY

RNAi-directed down-regulation of RSV results in increased resistance in rice (Oryza sativa L.)

(2012) Yong Zhou et al.   BIOTECHNOLOGY LETTERS

Significant down-regulation of γ-gliadins has minor effect on gluten and starch properties of bread wheat

(2012) Javier Gil-Humanes et al.   JOURNAL OF CEREAL SCIENCE

Fruit-specific RNAi-mediated suppression of SlNCED1 increases both lycopene and β-carotene contents in tomato fruit

(2012) Liang Sun et al.   JOURNAL OF EXPERIMENTAL BOTANY

NERD, a Plant-Specific GW Protein, Defines an Additional RNAi-Dependent Chromatin-Based Pathway in Arabidopsis

(2012) Dominique Pontier et al.   MOLECULAR CELL

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

Activation of defense against Phytophthora infestans in potato by down-regulation of syntaxin gene expression

(2012) Lennart Eschen-Lippold et al.   NEW PHYTOLOGIST

Engineering starch accumulation by manipulation of phosphate metabolism of starch

(2012) Sean E. Weise et al.   PLANT BIOTECHNOLOGY JOURNAL

Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production

(2012) Chunxiang Fu et al.   PLANT BIOTECHNOLOGY JOURNAL

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice

(2012) K. Xie et al.   PLANT PHYSIOLOGY

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing

(2012) Xiaoyan Li et al.   PLoS One

Association of Argonaute proteins and microRNAs can occur after cell lysis

(2012) K. J. Riley et al.   RNA

Transgenic tomato plants expressing artificial microRNAs for silencing the pre-coat and coat proteins of a begomovirus, Tomato leaf curl New Delhi virus, show tolerance to virus infection

(2012) Tien Van Vu et al.   VIRUS RESEARCH

Antiviral strategies in plants based on RNA silencing

(2011) Carmen Simón-Mateo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Intercellular and systemic movement of RNA silencing signals

(2011) Charles W Melnyk et al.   EMBO JOURNAL

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

(2011) Eric Huntzinger et al.   NATURE REVIEWS GENETICS

Ultra-low gossypol cottonseed: generational stability of the seed-specific, RNAi-mediated phenotype and resumption of terpenoid profile following seed germination

(2011) Keerti S. Rathore et al.   PLANT BIOTECHNOLOGY JOURNAL

Regulation of miR319 during cold stress in sugarcane

(2011) FLÁVIA THIEBAUT et al.   PLANT CELL AND ENVIRONMENT

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

(2011) Sonia Osorio et al.   PLANT PHYSIOLOGY

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass

(2011) G. S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fruit improvement using intragenesis and artificial microRNA

(2011) Barbara Molesini et al.   TRENDS IN BIOTECHNOLOGY

Viral suppressors of RNA silencing

(2011) József Burgyán et al.   TRENDS IN PLANT SCIENCE

A Pre-mRNA–Associating Factor Links Endogenous siRNAs to Chromatin Regulation

(2011) Kirk B. Burkhart et al.   PLoS Genetics

Over-expression of microRNA169 confers enhanced drought tolerance to tomato

(2010) Xiaohui Zhang et al.   BIOTECHNOLOGY LETTERS

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

(2010) Mingming Xin et al.   BMC PLANT BIOLOGY

Transcriptional Control of Gene Expression by MicroRNAs

(2010) Basel Khraiwesh et al.   CELL

An endogenous, systemic RNAi pathway in plants

(2010) Patrice Dunoyer et al.   EMBO JOURNAL

Post-transcriptional gene silencing of root-knot nematode in transformed soybean roots

(2010) Heba M.M. Ibrahim et al.   EXPERIMENTAL PARASITOLOGY

Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of thesftmutant

(2010) Xiaohui Zhang et al.   FEBS LETTERS

Profiling of cold-stress-responsive miRNAs in rice by microarrays

(2010) De-Kang Lv et al.   GENE

Argonaute proteins at a glance

(2010) C. Ender et al.   JOURNAL OF CELL SCIENCE

miR171 Family Members are Involved in Drought Response in Solanum tuberosum

(2010) Eul-Won Hwang et al.   JOURNAL OF PLANT BIOLOGY

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Shaping a better rice plant

(2010) Nathan Springer   NATURE GENETICS

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Highly efficient virus resistance mediated by artificial microRNAs that target the suppressor of PVX and PVY in plants

(2010) T. Ai et al.   PLANT BIOLOGY

Novel demonstration of RNAi in citrus reveals importance of citrus callose synthase in defence against Xanthomonas citri subsp. citri

(2010) Ramón Enrique et al.   PLANT BIOTECHNOLOGY JOURNAL

A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice

(2010) Gi-Gyeong Park et al.   PLANT MOLECULAR BIOLOGY

Enhancement of fruit shelf life by suppressing N-glycan processing enzymes

(2010) V. S. Meli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells

(2010) P. Dunoyer et al.   SCIENCE

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

(2010) A. Molnar et al.   SCIENCE

Rice histone deacetylase genes display specific expression patterns and developmental functions

(2009) Yongfeng Hu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

Identification of novel stress-regulated microRNAs from Oryza sativa L.

(2009) Xinyu Jian et al.   GENOMICS

Genetic modification of lignin biosynthesis for improved biofuel production

(2009) Hiroshi Hisano et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Mechanisms of dsRNA uptake in insects and potential of RNAi for pest control: A review

(2009) Hanneke Huvenne et al.   JOURNAL OF INSECT PHYSIOLOGY

Shoot-Specific Down-Regulation of Protein Farnesyltransferase (α-Subunit) for Yield Protection against Drought in Canola

(2009) Yang Wang et al.   Molecular Plant

RNAi-mediated resistance toPotato spindle tuber viroidin transgenic tomato expressing a viroid hairpin RNA construct

(2009) NORA SCHWIND et al.   MOLECULAR PLANT PATHOLOGY

Suppression of the Rice Fatty-Acid Desaturase GeneOsSSI2Enhances Resistance to Blast and Leaf Blight Diseases in Rice

(2009) Chang-Jie Jiang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional Analysis of Transcription Factors in Arabidopsis

(2009) Nobutaka Mitsuda et al.   PLANT AND CELL PHYSIOLOGY

Soybean Stem Lignin Concentration Relates to Resistance toSclerotinia sclerotiorum

(2009) A. J. Peltier et al.   PLANT DISEASE

Dose-dependent RNAi-mediated geminivirus resistance in the tropical root crop cassava

(2009) Hervé Vanderschuren et al.   PLANT MOLECULAR BIOLOGY

miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula

(2009) Inês Trindade et al.   PLANTA

Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis

(2009) Guru Jagadeeswaran et al.   PLANTA

The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila

(2009) Delphine Fagegaltier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Down-Regulated Expression of RACK1 Gene by RNA Interference Enhances Drought Tolerance in Rice

(2009) Da-hong LI et al.   Rice Science

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Silencing of γ-gliadins by RNA interference (RNAi) in bread wheat

(2008) Javier Gil-Humanes et al.   JOURNAL OF CEREAL SCIENCE

Effective and specific in planta RNAi in cyst nematodes: expression interference of four parasitism genes reduces parasitic success

(2008) Anoop S. Sindhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

RNA interference (RNAi)-induced suppression of nicotine demethylase activity reduces levels of a key carcinogen in cured tobacco leaves

(2008) Ramsey S. Lewis et al.   PLANT BIOTECHNOLOGY JOURNAL

Silencing by RNAi of the gene for Pns12, a viroplasm matrix protein ofRice dwarf virus, results in strong resistance of transgenic rice plants to the virus

(2008) Takumi Shimizu et al.   PLANT BIOTECHNOLOGY JOURNAL

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Gene silencing in plants using artificial microRNAs and other small RNAs

(2008) Stephan Ossowski et al.   PLANT JOURNAL

Overexpression of a fatty acid amide hydrolase compromises innate immunity in Arabidopsis

(2008) Li Kang et al.   PLANT JOURNAL

MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis

(2008) Bikram Datt Pant et al.   PLANT JOURNAL

Identification and characterization of small RNAs from the phloem of Brassica napus

(2008) Anja Buhtz et al.   PLANT JOURNAL

TheSolanum lycopersicumauxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development

(2008) Maaike de Jong et al.   PLANT JOURNAL

Aucsia Gene Silencing Causes Parthenocarpic Fruit Development in Tomato

(2008) B. Molesini et al.   PLANT PHYSIOLOGY

Silencing Onion Lachrymatory Factor Synthase Causes a Significant Change in the Sulfur Secondary Metabolite Profile

(2008) C. C. Eady et al.   PLANT PHYSIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Silencing of GmFAD3 gene by siRNA leads to low α-linolenic acids (18:3) of fad3-mutant phenotype in soybean [Glycine max (Merr.)]

(2008) Teresita Flores et al.   TRANSGENIC RESEARCH

RNAi-mediated crop protection against insects

(2008) Daniel R.G. Price et al.   TRENDS IN BIOTECHNOLOGY

Plant ARGONAUTES

(2008) Hervé Vaucheret   TRENDS IN PLANT SCIENCE

Small RNAs in tomato fruit and leaf development

(2007) A ITAYA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Alleviating peanut allergy using genetic engineering: the silencing of the immunodominant allergen Ara h 2 leads to its significant reduction and a decrease in peanut allergenicity

(2007) Hortense W. Dodo et al.   PLANT BIOTECHNOLOGY JOURNAL