Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection

(2010) François Bolduc et al.   BMC MOLECULAR BIOLOGY

miSolRNA: A tomato micro RNA relational database

(2010) Ariel A Bazzini et al.   BMC PLANT BIOLOGY

Short RNAs in Tomato

(2010) Tamas Dalmay   Journal of Integrative Plant Biology

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics

(2010) Z. Fei et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci

(2010) E. R. Havecker et al.   PLANT CELL

Arabinogalactan-Proteins: Key Regulators at the Cell Surface?

(2010) M. Ellis et al.   PLANT PHYSIOLOGY

Identification and characterization of a novel miR159 target not related to MYB in tomato

(2010) Kobi Buxdorf et al.   PLANTA

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

The NAC-domain transcription factor GOBLET specifies leaflet boundaries in compound tomato leaves

(2009) Y. Berger et al.   DEVELOPMENT

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Computational and analytical framework for small RNA profiling by high-throughput sequencing

(2009) N. Fahlgren et al.   RNA

Effects of APETALA2 on embryo, endosperm, and seed coat development determine seed size in Arabidopsis

(2009) Masa-aki Ohto et al.   SEXUAL PLANT REPRODUCTION

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill

(2008) Jianguang Zhang et al.   GENE

Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum)

(2008) Zujun Yin et al.   GENE

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Plastid Transcriptomics and Translatomics of Tomato Fruit Development and Chloroplast-to-Chromoplast Differentiation: Chromoplast Gene Expression Largely Serves the Production of a Single Protein

(2008) S. Kahlau et al.   PLANT CELL

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types

(2008) Cintia Goulart Kawashima et al.   PLANT JOURNAL

Invasion of the Arabidopsis Genome by the Tobacco Retrotransposon Tnt1 Is Controlled by Reversible Transcriptional Gene Silencing

(2008) J. Perez-Hormaeche et al.   PLANT PHYSIOLOGY

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

(2008) R. A. Mosher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Small RNAs in tomato fruit and leaf development

(2007) A ITAYA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Argonaute proteins: key players in RNA silencing

(2007) Gyorgy Hutvagner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY