Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry

Identification of miRNAs and their targets using high-throughput sequencing and degradome analysis in cytoplasmic male-sterile and its maintainer fertile lines of brassica juncea

(2013) Jinghua Yang et al.   BMC GENOMICS

Two strawberry miR159 family members display developmental-specific expression patterns in the fruit receptacle and cooperatively regulate Fa-GAMYB

(2012) Fabiana Csukasi et al.   NEW PHYTOLOGIST

Deep sequencing discovery of novel and conserved microRNAs in strawberry (Fragaria×ananassa)

(2012) Anjing Ge et al.   PHYSIOLOGIA PLANTARUM

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing

(2011) Lei Chen et al.   PLANTA

Quantitative trait loci and underlying candidate genes controlling agronomical and fruit quality traits in octoploid strawberry (Fragaria × ananassa)

(2011) Yasmín Zorrilla-Fontanesi et al.   THEORETICAL AND APPLIED GENETICS

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Systemic Signaling and Local Sensing of Phosphate in Common Bean: Cross-Talk between Photosynthate and MicroRNA399

(2010) Jun-Qi Liu et al.   Molecular Plant

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of microRNAs and their target genes in tobacco (Nicotiana tabacum)

(2010) Taylor P. Frazier et al.   PLANTA

Expression of microRNAs and its regulation in plants

(2010) Zhixin Xie et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

The long-distance signaling of mineral macronutrients

(2009) Tzu-Yin Liu et al.   CURRENT OPINION IN PLANT BIOLOGY

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

Identification of MicroRNAs in Wild Soybean (Glycine soja)

(2009) Rui Chen et al.   Journal of Integrative Plant Biology

MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria × ananassa Duch.) plants

(2009) He Li et al.   PLANT CELL REPORTS

Cloning and characterization of small non-coding RNAs from grape

(2009) Andrea Carra et al.   PLANT JOURNAL

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

In silico identification of conserved microRNAs in large number of diverse plant species

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Regulatory Network of MicroRNA399 and PHO2 by Systemic Signaling

(2008) S.-I Lin et al.   PLANT PHYSIOLOGY

Conifers have a unique small RNA silencing signature

(2008) E. V. Dolgosheina et al.   RNA

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS