Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

Identification and characterization of Argonaute gene family and meiosis-enriched Argonaute during sporogenesis in maize

(2014) Lihong Zhai et al.   Journal of Integrative Plant Biology

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Maize germinal cell initials accommodate hypoxia and precociously express meiotic genes

(2014) Timothy Kelliher et al.   PLANT JOURNAL

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

Transcriptomes and Proteomes Define Gene Expression Progression in Pre-meiotic Maize Anthers

(2014) Han Zhang et al.   G3-Genes Genomes Genetics

Biogenesis and function of rice small RNAs from non-coding RNA precursors

(2013) Siwaret Arikit et al.   CURRENT OPINION IN PLANT BIOLOGY

Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing

(2013) Jixian Zhai et al.   METHODS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cytological Characterization and Allelism Testing of Anther Developmental Mutants Identified in a Screen of Maize Male Sterile Lines

(2013) Ljudmilla Timofejeva et al.   G3-Genes Genomes Genetics

C. elegans piRNAs Mediate the Genome-wide Surveillance of Germline Transcripts

(2012) Heng-Chi Lee et al.   CELL

Maize multiple archesporial cells 1 (mac1), an ortholog of rice TDL1A, modulates cell proliferation and identity in early anther development

(2012) C.-J. R. Wang et al.   DEVELOPMENT

Methods for validation of miRNA sequence variants and the cleavage of their targets

(2012) Dong-Hoon Jeong et al.   METHODS

In situ localization of small RNAs in plants by using LNA probes

(2012) Marie Javelle et al.   Nature Protocols

Hypoxia Triggers Meiotic Fate Acquisition in Maize

(2012) T. Kelliher et al.   SCIENCE

Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I

(2011) Guo-Ling Nan et al.   BMC PLANT BIOLOGY

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein

(2011) Manjit Singh et al.   PLANT CELL

Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize

(2011) Yexiong Qian et al.   PLANT CELL REPORTS

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Emergence and patterning of the five cell types of the Zea mays anther locule

(2010) Timothy Kelliher et al.   DEVELOPMENTAL BIOLOGY

Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana

(2010) Felipe Fenselau de Felippes et al.   NUCLEIC ACIDS RESEARCH

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

The HD-ZIP IV transcription factor OCL4 is necessary for trichome patterning and anther development in maize

(2009) Vanessa Vernoud et al.   PLANT JOURNAL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Loss of RNA–Dependent RNA Polymerase 2 (RDR2) Function Causes Widespread and Unexpected Changes in the Expression of Transposons, Genes, and 24-nt Small RNAs

(2009) Yi Jia et al.   PLoS Genetics

Searching for SNPs with cloud computing

(2009) Ben Langmead et al.   GENOME BIOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY