Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

(2011) Ester M. Eckert et al.   ENVIRONMENTAL MICROBIOLOGY

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

(2011) Manuel Martinez-Garcia et al.   ISME Journal

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing

(2011) Manuel Martinez-Garcia et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Uncoupling of chitinase activity and uptake of hydrolysis products in freshwater bacterioplankton

(2011) Sara Beier et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

What's New Is Old: Resolving the Identity of Leptothrix ochracea Using Single Cell Genomics, Pyrosequencing and FISH

(2011) Emily J. Fleming et al.   PLoS One

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

(2011) Tanja Woyke et al.   PLoS One

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC

(2011) Rohit Ghai et al.   Environmental Microbiology Reports

Microbial Extracellular Enzymes and the Marine Carbon Cycle

(2010) Carol Arnosti   Annual Review of Marine Science

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Singlet oxygen, a neglected but important environmental factor: short-term and long-term effects on bacterioplankton composition in a humic lake

(2010) Stefanie P. Glaeser et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal differences in bacterial community composition following nutrient additions in a eutrophic lake

(2010) Ryan J. Newton et al.   ENVIRONMENTAL MICROBIOLOGY

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

Capturing diversity of marine heterotrophic protists: one cell at a time

(2010) Jane L Heywood et al.   ISME Journal

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

(2010) Laura Gómez-Consarnau et al.   PLOS BIOLOGY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake

(2009) Ulrike Buck et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative analyses of actinobacterial genomic fragments from Lake Kinneret

(2009) Alon Philosof et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France)

(2009) Didier Debroas et al.   ENVIRONMENTAL MICROBIOLOGY

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

(2009) R. D. Barabote et al.   GENOME RESEARCH

'Candidatus Planktophila limnetica', an actinobacterium representing one of the most numerically important taxa in freshwater bacterioplankton

(2009) J. Jezbera et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria

(2009) Adrian K Sharma et al.   ISME Journal

DSN Depletion is a Simple Method to Remove Selected Transcripts from cDNA Populations

(2009) Ekaterina A. Bogdanova et al.   MOLECULAR BIOTECHNOLOGY

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Assembling the Marine Metagenome, One Cell at a Time

(2009) Tanja Woyke et al.   PLoS One

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

(2009) Kuo-Hsiang Tang et al.   PLoS One

Do mycobacteria produce endospores?

(2009) B. A. Traag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY