Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

(2012) Laura Fancello et al.   ISME Journal

Lake microbial communities are resilient after a whole-ecosystem disturbance

(2012) Ashley Shade et al.   ISME Journal

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics

(2012) Simon Roux et al.   PLoS One

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

(2011) Kyoung-Ho Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing

(2011) Henk Bolhuis et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Physical and biological response of the Arabian Sea to tropical cyclone Phyan and its implications

(2011) P. Byju et al.   MARINE ENVIRONMENTAL RESEARCH

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

Biogeochemical Responses in the Southern East China Sea After Typhoons

(2011) Chin-Chang Hung et al.   OCEANOGRAPHY

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Typhoon effects on DOC dynamics in a phosphate-limited reservoir

(2010) YF Tseng et al.   AQUATIC MICROBIAL ECOLOGY

Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open ocean

(2010) Ian Hewson et al.   ENVIRONMENTAL MICROBIOLOGY

The dynamics of microbial partnerships in the coral Isopora palifera

(2010) Chung-Pin Chen et al.   ISME Journal

Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean

(2010) Ludwig Jardillier et al.   ISME Journal

Typhoons initiate predictable change in aquatic bacterial communities

(2010) Stuart E. Jones et al.   LIMNOLOGY AND OCEANOGRAPHY

Mobilization and transport of coarse woody debris to the oceans triggered by an extreme tropical storm

(2010) A. J. West et al.   LIMNOLOGY AND OCEANOGRAPHY

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

(2010) Luciano A. Marraffini et al.   NATURE REVIEWS GENETICS

Effects of Experimental Choices and Analysis Noise on Surveys of the "Rare Biosphere"

(2009) T. J. Hamp et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

(2009) Erik Kristiansson et al.   BIOINFORMATICS

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

Metagenomic Analysis of RNA Viruses in a Fresh Water Lake

(2009) Appolinaire Djikeng et al.   PLoS One

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

Phylogenetic Diversity of Sequences of Cyanophage Photosynthetic Gene psbA in Marine and Freshwaters

(2008) C. Chenard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms

(2008) Katri A Berg et al.   ISME Journal

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

Effects of climate events driven hydrodynamics on dissolved oxygen in a subtropical deep reservoir in Taiwan

(2008) Cheng-Wei Fan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil and phosphorus redistribution along a steep tea plantation in the Feitsui reservoir catchment of northern Taiwan

(2008) Franz Zehetner et al.   SOIL SCIENCE AND PLANT NUTRITION

Adapting to environmental changes using specialized paralogs

(2008) Gabino Sanchez-Perez et al.   TRENDS IN GENETICS