Genomics of Fagaceae

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

(2011) Patricia Faivre Rampant et al.   BMC GENOMICS

Proteins associated with cork formation in Quercus suber L. stem tissues

(2011) Cândido P.P. Ricardo et al.   Journal of Proteomics

Studies of variability in Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.) through acorn protein profile analysis

(2011) José Valero Galván et al.   Journal of Proteomics

Community genetics: what have we accomplished and where should we be going?

(2011) E. I. Hersch-Green et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Proteomics research on forest trees, the most recalcitrant and orphan plant species

(2011) Nieves Abril et al.   PHYTOCHEMISTRY

Seasonal variation in transcript abundance in cork tissue analyzed by real time RT-PCR

(2011) M. Soler et al.   TREE PHYSIOLOGY

Changes in the proteome of juvenile European beech following three years exposure to free-air elevated ozone

(2011) R Kerner et al.   iForest-Biogeosciences and Forestry

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study

(2010) Jérôme Durand et al.   BMC GENOMICS

Assessment of beech scale resistance in full- and half-sibling American beech families

(2010) Jennifer L. Koch et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack

(2010) CHARLES H. CANNON et al.   MOLECULAR ECOLOGY

Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera)

(2010) Matthew S. Olson et al.   NEW PHYTOLOGIST

In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?

(2010) Camille Lepoittevin et al.   PLoS One

Genomics of forest and ecosystem health in the Fagaceae: meeting report

(2010) Antoine Kremer et al.   Tree Genetics & Genomes

Fate of transgenes in the forest tree genome

(2010) M. Raj Ahuja   Tree Genetics & Genomes

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Palaeogenomics of plants: synteny-based modelling of extinct ancestors

(2010) Michael Abrouk et al.   TRENDS IN PLANT SCIENCE

Generation of Expressed Sequence Tags and development of microsatellite markers for Castanopsis sieboldii var. sieboldii (Fagaceae)

(2009) Saneyoshi Ueno et al.   ANNALS OF FOREST SCIENCE

Diversity of water use efficiency among Quercus robur genotypes: contribution of related leaf traits

(2009) Magali Roussel et al.   ANNALS OF FOREST SCIENCE

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Ozone fumigation (twice ambient) reduces leaf infestation following natural and artificial inoculation by the endophytic fungus Apiognomonia errabunda of adult European beech trees

(2009) Maren Olbrich et al.   ENVIRONMENTAL POLLUTION

Identification of plant genes involved on the initial contact between ectomycorrhizal symbionts (Castanea sativa – European chestnut and Pisolithus tinctorius)

(2009) Mónica Sebastiana et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Down-regulation of defense genes and resource allocation into infected roots as factors for compatibility between Fagus sylvatica and Phytophthora citricola

(2009) Katja Schlink   FUNCTIONAL & INTEGRATIVE GENOMICS

Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks

(2009) J Derory et al.   HEREDITY

The diversity of 13C isotope discrimination in a Quercus robur full-sib family is associated with differences in intrinsic water use efficiency, transpiration efficiency, and stomatal conductance

(2009) Magali Roussel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Patterns of Nucleotide Diversity at the Methionine Synthase Locus in Fragmented and Continuous Populations of a Wind-Pollinated Tree, Quercus mongolica var. crispula

(2009) Nguyen D. Quang et al.   JOURNAL OF HEREDITY

Transformation and inheritance of Bt genes inGossypium hirsutum

(2009) Bushra Rashid et al.   JOURNAL OF PLANT BIOLOGY

Comparative Proteomic Analysis of Responses to Pathogen Infection and Wounding inFagus sylvatica

(2009) Cristina-Maria Valcu et al.   JOURNAL OF PROTEOME RESEARCH

Genetic and genomic approaches to assess adaptive genetic variation in plants: forest trees as a model

(2009) Oliver Gailing et al.   PHYSIOLOGIA PLANTARUM

Identification and characterization of differentially expressed genes from Fagus sylvatica roots after infection with Phytophthora citricola

(2009) Katja Schlink   PLANT CELL REPORTS

Sexually mature transgenic American chestnut trees via embryogenic suspension-based transformation

(2009) Gisele M. Andrade et al.   PLANT CELL REPORTS

Ploidy variation in Trigonobalanus verticillata (Fagaceae)

(2009) Gao Chen et al.   PLANT SYSTEMATICS AND EVOLUTION

Proteomic analysis from haploid and diploid embryos of Quercus suber L. identifies qualitative and quantitative differential expression patterns

(2009) Aranzazu Gómez et al.   PROTEOMICS

The biogeographic history of beech trees

(2009) Thomas Denk et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Development of EST-SSR markers from an inner bark cDNA library of Fagus crenata (Fagaceae)

(2008) Saneyoshi Ueno et al.   CONSERVATION GENETICS

Ozone affects shikimate pathway transcripts and monomeric lignin composition in European beech (Fagus sylvatica L.)

(2008) Gunter A. Betz et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Microsatellite markers derived from Quercus mongolica var. crispula (Fagaceae) inner bark expressed sequence tags

(2008) Saneyoshi Ueno et al.   GENES & GENETIC SYSTEMS

Multilocus Patterns of Nucleotide Polymorphism and the Demographic History of Populus tremula

(2008) P. K. Ingvarsson   GENETICS

Quantitative trait loci affecting stomatal density and growth in aQuercus roburprogeny: implications for the adaptation to changing environments

(2008) OLIVER GAILING et al.   GLOBAL CHANGE BIOLOGY

Nucleotide variation in Quercus crispula Blume

(2008) N D Quang et al.   HEREDITY

Changes in the protein profile of Quercus ilex leaves in response to drought stress and recovery

(2008) Sira Echevarría-Zomeño et al.   JOURNAL OF PLANT PHYSIOLOGY

Role of genomics in the potential restoration of the American chestnut

(2008) Nicholas Wheeler et al.   Tree Genetics & Genomes