Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

(2012) Nathalie Pavy et al.   BMC BIOLOGY

Scanning SNPs from a large set of expressed genes to assess the impact of artificial selection on the undomesticated genetic diversity of white spruce

(2012) Marie-Claire Namroud et al.   Evolutionary Applications

Disentangling the Roles of History and Local Selection in Shaping Clinal Variation of Allele Frequencies and Gene Expression in Norway Spruce ( Picea abies )

(2012) Jun Chen et al.   GENETICS

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

SNP Discovery and Development of a High-Density Genotyping Array for Sunflower

(2012) Eleni Bachlava et al.   PLoS One

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

(2012) Ignazio Verde et al.   PLoS One

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

(2011) Emilie Chancerel et al.   BMC GENOMICS

Single nucleotide polymorphism discovery in elite north american potato germplasm

(2011) John P Hamilton et al.   BMC GENOMICS

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

(2011) Betty Pelgas et al.   BMC GENOMICS

Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees

(2011) Caroline L Côté et al.   BMC PLANT BIOLOGY

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

(2011) Dario Grattapaglia et al.   BMC PLANT BIOLOGY

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)

(2011) Grit Haseneyer et al.   BMC PLANT BIOLOGY

Association Genetics of Wood Physical Traits in the Conifer White Spruce and Relationships With Gene Expression

(2011) Jean Beaulieu et al.   GENETICS

The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers

(2011) N Pavy et al.   HEREDITY

Development of versatile gene-based SNP assays in maize (Zea mays L.)

(2011) Jafar Mammadov et al.   MOLECULAR BREEDING

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

(2011) Martin W. Ganal et al.   PLoS One

Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies

(2011) Satish Kumar et al.   Tree Genetics & Genomes

Arabidopsis as a model for wood formation

(2010) Jing Zhang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Subgroup 4 R2R3-MYBs in conifer trees: gene family expansion and contribution to the isoprenoid- and flavonoid-oriented responses

(2010) Frank Bedon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Evolution of Regulatory Genes in Spruces from Different Species and Continents: Heterogeneous Patterns of Linkage Disequilibrium and Selection but Correlated Recent Demographic Changes

(2010) Marie-Claire Namroud et al.   JOURNAL OF MOLECULAR EVOLUTION

Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)

(2010) Jason A. Holliday et al.   NEW PHYTOLOGIST

Molecular events of apical bud formation in white spruce, Picea glauca

(2010) WALID EL KAYAL et al.   PLANT CELL AND ENVIRONMENT

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?

(2010) Camille Lepoittevin et al.   PLoS One

Discordant mtDNA and cpDNA phylogenies indicate geographic speciation and reticulation as driving factors for the diversification of the genus Picea

(2010) Marie Bouillé et al.   Tree Genetics & Genomes

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Association Genetics of Coastal Douglas Fir ( Pseudotsuga menziesii var. menziesii , Pinaceae). I. Cold-Hardiness Related Traits

(2009) Andrew J. Eckert et al.   GENETICS

Phylogeography of white spruce (Picea glauca) in eastern North America reveals contrasting ecological trajectories

(2009) Guillaume de Lafontaine et al.   JOURNAL OF BIOGEOGRAPHY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce

(2008) Nathalie Pavy et al.   BMC GENOMICS

Quality assessment parameters for EST-derived SNPs from catfish

(2008) Shaolin Wang et al.   BMC GENOMICS

Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis

(2008) Claude Bomal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY

Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses

(2008) Nathalie Pavy et al.   NEW PHYTOLOGIST