A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome
出版年份 2019 全文链接
标题
A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome
作者
关键词
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出版物
Reviews in Aquaculture
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2019-08-13
DOI
10.1111/raq.12375
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Gene expression of putative type VI secretion system (T6SS) genes in the emergent fish pathogen Francisella noatunensis subsp. orientalis in different physiochemical conditions
- (2019) Jainee Lewis et al. BMC MICROBIOLOGY
- Transcriptome changes in response to temperature in the fish pathogen Photobacterium damselae subsp. damselae: Clues to understand the emergence of disease outbreaks at increased seawater temperatures
- (2019) Xosé M. Matanza et al. PLoS One
- Microbial embryonal colonization during pipefish male pregnancy
- (2019) Anne Beemelmanns et al. Scientific Reports
- Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus
- (2019) Johan S. Sáenz et al. Microbiome
- A longitudinal assessment of host-microbe-parasite interactions resolves the zebrafish gut microbiome’s link to Pseudocapillaria tomentosa infection and pathology
- (2019) Christopher A. Gaulke et al. Microbiome
- Dual RNA-Seq reveals the role of a transcriptional regulator gene in pathogen-host interactions between Pseudomonas plecoglossicida and Epinephelus coioides
- (2019) Beibei Zhang et al. FISH & SHELLFISH IMMUNOLOGY
- Dual RNA-seq reveals the effect of the flgM gene of Pseudomonas plecoglossicida on the immune response of Epinephelus coioides
- (2019) Yujia Sun et al. FISH & SHELLFISH IMMUNOLOGY
- Gut segments outweigh the diet in shaping the intestinal microbiota composition in grass carp Ctenopharyngodon idellus
- (2019) Wenwen Feng et al. AMB Express
- Starvation influences the microbiota assembly and expression of immunity-related genes in the intestine of grass carp ( Ctenopharyngodon idellus )
- (2018) Ngoc Tuan Tran et al. AQUACULTURE
- Soybean meal-induced enteritis in Atlantic salmon ( Salmo salar) and Chinook salmon ( Oncorhynchus tshawytscha ) but not in pink salmon ( O . gorbuscha )
- (2018) Marije Booman et al. AQUACULTURE
- Effects of different solid carbon sources on water quality, biofloc quality and gut microbiota of Nile tilapia ( Oreochromis niloticus ) larvae
- (2018) Jiawei Li et al. AQUACULTURE
- Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil
- (2018) Andrea Bagi et al. BMC MICROBIOLOGY
- Interrogating the microbiome: experimental and computational considerations in support of study reproducibility
- (2018) Carine Poussin et al. DRUG DISCOVERY TODAY
- Structural and compositional mismatch between captive and wild Atlantic salmon (Salmo salar ) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methods
- (2018) Camille Lavoie et al. Evolutionary Applications
- Mucus glycosylation, immunity and bacterial microbiota associated to the skin of experimentally ulcered gilthead seabream ( Sparus aurata )
- (2018) Silvana Teresa Tapia-Paniagua et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review
- (2018) Arun Sudhagar et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
- (2018) Rekha Seshadri et al. NATURE BIOTECHNOLOGY
- Culturing the human microbiota and culturomics
- (2018) Jean-Christophe Lagier et al. NATURE REVIEWS MICROBIOLOGY
- Intestinal microbiota composition is altered according to nutritional biorhythms in the leopard coral grouper (Plectropomus leopardus)
- (2018) Miyuki Mekuchi et al. PLoS One
- Applied Hologenomics: Feasibility and Potential in Aquaculture
- (2018) Morten T. Limborg et al. TRENDS IN BIOTECHNOLOGY
- Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity
- (2018) Eric C. Keen et al. TRENDS IN MICROBIOLOGY
- Predictive functional profiles using metagenomic 16S rRNA data: a novel approach to understanding the microbial ecology of aquaculture systems
- (2018) Ángel Martín Ortiz-Estrada et al. Reviews in Aquaculture
- Host Age Affects the Development of Southern Catfish Gut Bacterial Community Divergent From That in the Food and Rearing Water
- (2018) Zhimin Zhang et al. Frontiers in Microbiology
- Parasite-Microbiota Interactions With the Vertebrate Gut: Synthesis Through an Ecological Lens
- (2018) Jacqueline M. Leung et al. Frontiers in Microbiology
- The Intestinal Mycobiota in Wild Zebrafish Comprises Mainly Dothideomycetes While Saccharomycetes Predominate in Their Laboratory-Reared Counterparts
- (2018) Prabhugouda Siriyappagouder et al. Frontiers in Microbiology
- The Gut Microbiota of Marine Fish
- (2018) Sian Egerton et al. Frontiers in Microbiology
- CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software
- (2018) Toby J. Wilkinson et al. Frontiers in Microbiology
- Current Status of the Use of Antibiotics and the Antimicrobial Resistance in the Chilean Salmon Farms
- (2018) Claudio D. Miranda et al. Frontiers in Microbiology
- Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences
- (2018) Robert C. Edgar PeerJ
- Effects of predation stress and food ration on perch gut microbiota
- (2018) Yinghua Zha et al. Microbiome
- Function and functional redundancy in microbial systems
- (2018) Stilianos Louca et al. Nature Ecology & Evolution
- Interpopulation Variation in the Atlantic Salmon Microbiome Reflects Environmental and Genetic Diversity
- (2018) Tamsyn M. Uren Webster et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors
- (2018) Zoe A. Pratte et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies
- (2018) Jolinda Pollock et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Variation of the bacterial composition of biofloc and the intestine of Nile tilapia Oreochromis niloticus , cultivated using biofloc technology, supplied different feed rations
- (2018) Jorge Alberto Pérez-Fuentes et al. AQUACULTURE RESEARCH
- Isolation and characterization of native probiotics for fish farming
- (2018) Konrad M. Wanka et al. BMC MICROBIOLOGY
- Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild
- (2018) Andrea M. Tarnecki et al. MICROBIAL ECOLOGY
- Hordes of Phages in the Gut of the Tilapia Sarotherodon melanotheron
- (2018) Yvan Bettarel et al. Scientific Reports
- A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area
- (2018) Timothy P. Jenkins et al. Scientific Reports
- Lactic Acid Bacteria in Finfish—An Update
- (2018) Einar Ringø et al. Frontiers in Microbiology
- Managing the Microbial Community of Marine Fish Larvae: A Holistic Perspective for Larviculture
- (2018) Olav Vadstein et al. Frontiers in Microbiology
- Insights Into Culturomics of the Rumen Microbiome
- (2018) Tamar Zehavi et al. Frontiers in Microbiology
- Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet
- (2018) Marlène Chiarello et al. Microbiome
- Changes in microbiota along the intestine of grass carp (Ctenopharyngodon idella): Community, interspecific interactions, and functions
- (2018) Gang Yang et al. AQUACULTURE
- Biotic and abiotic factors influencing channel catfish egg and gut microbiome dynamics during early life stages
- (2018) S. Abdul Razak et al. AQUACULTURE
- Effects of stocking density on the growth performance, digestive enzyme activities, antioxidant resistance, and intestinal microflora of blunt snout bream ( Megalobrama amblycephala ) juveniles
- (2018) Yi‐Wei Wang et al. AQUACULTURE RESEARCH
- Association with a sea anemone alters the skin microbiome of clownfish
- (2018) Zoe A. Pratte et al. CORAL REEFS
- Adaptation to Fasting in Crucian Carp (Carassius auratus): Gut Microbiota and Its Correlative Relationship with Immune Function
- (2018) Tongtong Li et al. MICROBIAL ECOLOGY
- Innate Immune Influences on the Gut Microbiome: Lessons from Mouse Models
- (2018) Susan J. Robertson et al. TRENDS IN IMMUNOLOGY
- Critical Role for a Subset of Intestinal Macrophages in Shaping Gut Microbiota in Adult Zebrafish
- (2018) Alison M. Earley et al. Cell Reports
- Host genetic selection for cold tolerance shapes microbiome composition and modulates its response to temperature
- (2018) Fotini Kokou et al. eLife
- Exposure to Antibiotics Affects Saponin Immersion-Induced Immune Stimulation and Shift in Microbial Composition in Zebrafish Larvae
- (2018) Adrià López Nadal et al. Frontiers in Microbiology
- Dual RNA-Seq Uncovers Metabolic Amino Acids Dependency of the Intracellular Bacterium Piscirickettsia salmonis Infecting Atlantic Salmon
- (2018) Diego Valenzuela-Miranda et al. Frontiers in Microbiology
- Probiotics as Means of Diseases Control in Aquaculture, a Review of Current Knowledge and Future Perspectives
- (2018) Seyed Hossein Hoseinifar et al. Frontiers in Microbiology
- The Change of Teleost Skin Commensal Microbiota Is Associated With Skin Mucosal Transcriptomic Responses During Parasitic Infection by Ichthyophthirius multifillis
- (2018) Xiaoting Zhang et al. Frontiers in Immunology
- Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi )
- (2018) Jackson Wilkes Walburn et al. Microbial Biotechnology
- Analysis of the gut and gill microbiome of resistant and susceptible lines of rainbow trout (Oncorhynchus mykiss)
- (2018) Ryan M. Brown et al. FISH & SHELLFISH IMMUNOLOGY
- Consumption of florfenicol-medicated feed alters the composition of the channel catfish intestinal microbiota including enriching the relative abundance of opportunistic pathogens
- (2018) Erlong Wang et al. AQUACULTURE
- Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm
- (2018) Giana Bastos Gomes et al. AQUACULTURE
- Response of the gut microbiome of Megalobrama amblycephala to crowding stress
- (2018) Fukuan Du et al. AQUACULTURE
- Ammonia exposure alters the expression of immune-related and antioxidant enzymes-related genes and the gut microbial community of crucian carp ( Carassius auratus )
- (2017) Xiao-Zhou Qi et al. FISH & SHELLFISH IMMUNOLOGY
- Cellular and transcriptomic response to treatment with the probiotic candidate Vibrio lentus in gnotobiotic sea bass ( Dicentrarchus labrax ) larvae
- (2017) Marlien Schaeck et al. FISH & SHELLFISH IMMUNOLOGY
- Interplay between the gut microbiota and immune responses of ayu ( Plecoglossus altivelis ) during Vibrio anguillarum infection
- (2017) Li Nie et al. FISH & SHELLFISH IMMUNOLOGY
- Current applications, selection, and possible mechanisms of actions of synbiotics in improving the growth and health status in aquaculture: A review
- (2017) Truong-Giang Huynh et al. FISH & SHELLFISH IMMUNOLOGY
- Pathogen invasion changes the intestinal microbiota composition and induces innate immune responses in the zebrafish intestine
- (2017) Hui-Ting Yang et al. FISH & SHELLFISH IMMUNOLOGY
- Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut
- (2017) Clayton M. Small et al. Genome Biology and Evolution
- Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha
- (2017) James M. Davison et al. GENOME RESEARCH
- Where less may be more: how the rare biosphere pulls ecosystems strings
- (2017) Alexandre Jousset et al. ISME Journal
- Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics
- (2017) A.M. Tarnecki et al. JOURNAL OF APPLIED MICROBIOLOGY
- Teleosts as Model Organisms To Understand Host-Microbe Interactions
- (2017) Emily A. Lescak et al. JOURNAL OF BACTERIOLOGY
- The environmental and host-associated bacterial microbiota of Arctic seawater-farmed Atlantic salmon with ulcerative disorders
- (2017) C Karlsen et al. JOURNAL OF FISH DISEASES
- Histopathological changes on the gills of asp (Aspius aspius ) and European catfish (Silurus glanis ) caused by Lamproglena pulchella and a Lamproglena sp. (Copepoda: Lernaeidae), respectively
- (2017) K Molnár et al. JOURNAL OF FISH DISEASES
- Population-Specific Responses to Interspecific Competition in the Gut Microbiota of Two Atlantic Salmon (Salmo salar) Populations
- (2017) Xiaoping He et al. MICROBIAL ECOLOGY
- Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development
- (2017) Xinghao Li et al. MICROBIAL ECOLOGY
- Bacterial Signatures of “Red-Operculum” Disease in the Gut of Crucian Carp (Carassius auratus)
- (2017) Tongtong Li et al. MICROBIAL ECOLOGY
- Shotgun metagenomics, from sampling to analysis
- (2017) Christopher Quince et al. NATURE BIOTECHNOLOGY
- Genomic diversification of giant enteric symbionts reflects host dietary lifestyles
- (2017) David Kamanda Ngugi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interhost dispersal alters microbiome assembly and can overwhelm host innate immunity in an experimental zebrafish model
- (2017) Adam R. Burns et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice
- (2017) Jessica L. Mark Welch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The advancement of probiotics research and its application in fish farming industries
- (2017) Goutam Banerjee et al. RESEARCH IN VETERINARY SCIENCE
- Antibiotic growth promoter olaquindox increases pathogen susceptibility in fish by inducing gut microbiota dysbiosis
- (2017) Suxu He et al. Science China-Life Sciences
- First Insights into the Diverse Human Archaeome: Specific Detection of Archaea in the Gastrointestinal Tract, Lung, and Nose and on Skin
- (2017) Kaisa Koskinen et al. mBio
- Prebiotics as functional ingredients: focus on Mediterranean fish aquaculture
- (2017) Inês Guerreiro et al. Reviews in Aquaculture
- Progress in fish gastrointestinal microbiota research
- (2017) An R. Wang et al. Reviews in Aquaculture
- Resolving host–pathogen interactions by dual RNA-seq
- (2017) Alexander J. Westermann et al. PLoS Pathogens
- High Throughput Identification of Antimicrobial Peptides from Fish Gastrointestinal Microbiota
- (2017) Bo Dong et al. Toxins
- Regulation of life span by the gut microbiota in the short-lived African turquoise killifish
- (2017) Patrick Smith et al. eLife
- Virulence factor activity relationships (VFARs): a bioinformatics perspective
- (2017) Hassan Waseem et al. Environmental Science-Processes & Impacts
- Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity
- (2017) Marc Troussellier et al. Frontiers in Microbiology
- The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals Differences in Composition and Potential Function
- (2017) Carolina Ramírez et al. Frontiers in Microbiology
- The Skin-Mucus Microbial Community of Farmed Atlantic Salmon (Salmo salar)
- (2017) Giusi Minniti et al. Frontiers in Microbiology
- Fine Flounder (Paralichthys adspersus) Microbiome Showed Important Differences between Wild and Reared Specimens
- (2017) Carolina Ramírez et al. Frontiers in Microbiology
- Walleye Autochthonous Bacteria as Promising Probiotic Candidates against Flavobacterium columnare
- (2017) Hamza Seghouani et al. Frontiers in Microbiology
- Viromes As Genetic Reservoir for the Microbial Communities in Aquatic Environments: A Focus on Antimicrobial-Resistance Genes
- (2017) Stefano Colombo et al. Frontiers in Microbiology
- The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens
- (2017) Sion C. Bayliss et al. Frontiers in Microbiology
- Under Pressure: Interactions between Commensal Microbiota and the Teleost Immune System
- (2017) Cecelia Kelly et al. Frontiers in Immunology
- Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic
- (2017) Jeanette Carlson et al. Infection and Drug Resistance
- Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish
- (2017) Anti Vasemägi et al. mSphere
- Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish
- (2017) Victor Schmidt et al. mSystems
- Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits
- (2017) Daniel Castillo et al. mSystems
- The aquaculture microbiome at the centre of business creation
- (2017) Karen K. Dittmann et al. Microbial Biotechnology
- RNA-Seq differential expression analysis: An extended review and a software tool
- (2017) Juliana Costa-Silva et al. PLoS One
- Parasitism perturbs the mucosal microbiome of Atlantic Salmon
- (2017) M. S. Llewellyn et al. Scientific Reports
- Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny
- (2017) François-Étienne Sylvain et al. Scientific Reports
- Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)
- (2017) Carola E. Dehler et al. Scientific Reports
- Effect of dietary probiotic supplementation on intestinal microbiota and physiological conditions of Nile tilapia (Oreochromis niloticus) under waterborne cadmium exposure
- (2016) Qixiao Zhai et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Response of gut microbiota to salinity change in two euryhaline aquatic animals with reverse salinity preference
- (2016) Meiling Zhang et al. AQUACULTURE
- Soybean meal induces enteritis in turbot Scophthalmus maximus at high supplementation levels
- (2016) Min Gu et al. AQUACULTURE
- The Interaction between Respiratory Pathogens and Mucus
- (2016) Mark Zanin et al. Cell Host & Microbe
- Germ-free sea bass Dicentrarchus labrax larval model: a valuable tool in the study of host-microbe interactions
- (2016) M Schaeck et al. DISEASES OF AQUATIC ORGANISMS
- Protective responses of intestinal mucous cells in a range of fish-helminth systems
- (2016) G Bosi et al. JOURNAL OF FISH DISEASES
- Standardizing the microbiota of fish used in research
- (2016) I N Vatsos LABORATORY ANIMALS
- Microbial Diversity and Parasitic Load in Tropical Fish of Different Environmental Conditions
- (2016) Philipp Hennersdorf et al. PLoS One
- Ontogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes
- (2016) Jacob W. Bledsoe et al. PLoS One
- Bacterial symbiosis in the fish gut and its role in health and metabolism
- (2016) Goutam Banerjee et al. SYMBIOSIS
- Novel immunologic tolerance of human cancer cell xenotransplants in zebrafish
- (2016) Beibei Zhang et al. Translational Research
- Branchial nitrogen cycle symbionts can remove ammonia in fish gills
- (2016) Maartje A.H.J. van Kessel et al. Environmental Microbiology Reports
- Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon
- (2016) Jep Lokesh et al. Scientific Reports
- pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui (Colossoma macropomum)
- (2016) François-Étienne Sylvain et al. Scientific Reports
- Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota
- (2016) Travis J Wiles et al. PLOS BIOLOGY
- The Gut Microbial Community of Antarctic Fish Detected by 16S rRNA Gene Sequence Analysis
- (2016) Wei Song et al. Biomed Research International
- Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
- (2016) Juan Jovel et al. Frontiers in Microbiology
- Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish
- (2016) Christopher A. Gaulke et al. PLoS One
- Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes
- (2016) Shoko Iwai et al. PLoS One
- A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research
- (2016) Karina Gajardo et al. Scientific Reports
- Symbiont-derived sphingolipids modulate mucosal homeostasis and B cells in teleost fish
- (2016) Ali Sepahi et al. Scientific Reports
- Infectious Diseases Affect Marine Fisheries and Aquaculture Economics
- (2015) Kevin D. Lafferty et al. Annual Review of Marine Science
- Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin
- (2015) Liam Lowrey et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Effects of transportation stress and addition of salt to transport water on the skin mucosal homeostasis of rainbow trout (Oncorhynchus mykiss)
- (2015) Luca Tacchi et al. AQUACULTURE
- A new view of the fish gut microbiome: Advances from next-generation sequencing
- (2015) Mahdi Ghanbari et al. AQUACULTURE
- Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?
- (2015) E. Ringø et al. AQUACULTURE NUTRITION
- Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.
- (2015) Kathrin P. Aßhauer et al. BIOINFORMATICS
- Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis
- (2015) Erik Hjerde et al. BMC GENOMICS
- The host effects of Gambusia affinis with an antibiotic-disrupted microbiome
- (2015) Jeanette M. Carlson et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY
- Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations
- (2015) Kathryn Milligan-Myhre et al. Disease Models & Mechanisms
- Prospects of host-associated microorganisms in fish and penaeids as probiotics with immunomodulatory functions
- (2015) Carlo C. Lazado et al. FISH & SHELLFISH IMMUNOLOGY
- Effect of a new recombinant Aeromonas hydrophila vaccine on the grass carp intestinal microbiota and correlations with immunological responses
- (2015) Lei Liu et al. FISH & SHELLFISH IMMUNOLOGY
- The composition of the zebrafish intestinal microbial community varies across development
- (2015) W Zac Stephens et al. ISME Journal
- Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development
- (2015) Adam R Burns et al. ISME Journal
- Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh
- (2015) Andrea M. Larsen et al. MICROBIAL ECOLOGY
- Community assembly of a euryhaline fish microbiome during salinity acclimation
- (2015) Victor T. Schmidt et al. MOLECULAR ECOLOGY
- Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish Gut
- (2015) Sandi Wong et al. mBio
- The impact of rearing environment on the development of gut microbiota in tilapia larvae
- (2015) Christos Giatsis et al. Scientific Reports
- Disparate developmental patterns of immune responses to bacterial and viral infections in fish
- (2015) Rosario Castro et al. Scientific Reports
- Immersion infection of germ-free zebrafish with Listeria monocytogenes induces transient expression of innate immune response genes
- (2015) Ying Shan et al. Frontiers in Microbiology
- Selective Manipulation of the Gut Microbiota Improves Immune Status in Vertebrates
- (2015) Ana Montalban-Arques et al. Frontiers in Immunology
- Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure
- (2015) Adrienne B Narrowe et al. Microbiome
- The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles
- (2015) Y. Tarabichi et al. Microbiome
- The vocabulary of microbiome research: a proposal
- (2015) Julian R. Marchesi et al. Microbiome
- Entericidin Is Required for a Probiotic Treatment (Enterobacter sp. Strain C6-6) To Protect Trout from Cold-Water Disease Challenge
- (2014) Carla B. Schubiger et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Debaryomyces hanseniiandRhodotorula mucilaginosacomprised the yeast core gut microbiota of wild and reared carnivorous salmonids, croaker and yellowtail
- (2014) Patricia Raggi et al. ENVIRONMENTAL MICROBIOLOGY
- Unique and shared responses of the gut microbiota to prolonged fasting: a comparative study across five classes of vertebrate hosts
- (2014) Kevin D. Kohl et al. FEMS MICROBIOLOGY ECOLOGY
- Diet type dictates the gut microbiota and the immune response against Yersinia ruckeri in rainbow trout (Oncorhynchus mykiss)
- (2014) Hans-Christian Ingerslev et al. FISH & SHELLFISH IMMUNOLOGY
- Investigation of the Link between Broodstock Infection, Vertical Transmission, and Prevalence ofFlavobacterium psychrophilumin Eggs and Progeny of Rainbow Trout and Coho Salmon
- (2014) Amy Long et al. JOURNAL OF AQUATIC ANIMAL HEALTH
- Intestinal microbiota in fishes: what's known and what's not
- (2014) Kendall D. Clements et al. MOLECULAR ECOLOGY
- RNA-Seq Technology and Its Application in Fish Transcriptomics
- (2014) Xi Qian et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Inter Individual Variations of the Fish Skin Microbiota: Host Genetics Basis of Mutualism?
- (2014) Sébastien Boutin et al. PLoS One
- Pathogen bacteria adhesion to skin mucus of fishes
- (2014) Said Benhamed et al. VETERINARY MICROBIOLOGY
- Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics
- (2014) Muriel Vayssier-Taussat et al. Frontiers in Cellular and Infection Microbiology
- Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries
- (2014) Martin S. Llewellyn et al. Frontiers in Microbiology
- Dietary differences are reflected on the gut prokaryotic community structure of wild and commercially reared sea bream (Sparus aurata)
- (2014) Konstantinos A. Kormas et al. MicrobiologyOpen
- Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density
- (2013) S. Wong et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Diversity of the skin microbiota of fishes: evidence for host species specificity
- (2013) Andrea Larsen et al. FEMS MICROBIOLOGY ECOLOGY
- Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus)
- (2013) Mengxin Xing et al. FEMS MICROBIOLOGY ECOLOGY
- Factors influencing the grass carp gut microbiome and its effect on metabolism
- (2013) Jiajia Ni et al. FEMS MICROBIOLOGY ECOLOGY
- The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens
- (2013) Daniela Gomez et al. FISH & SHELLFISH IMMUNOLOGY
- Exploring host-microbiota interactions in animal models and humans
- (2013) A. D. Kostic et al. GENES & DEVELOPMENT
- Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish
- (2013) Lin Ye et al. ISME Journal
- Change in food ingestion induces rapid shifts in the diversity of microbiota associated with cutaneous mucus of Atlantic salmonSalmo salar
- (2013) A. Landeira-Dabarca et al. JOURNAL OF FISH BIOLOGY
- Antimicrobial Peptides (AMPs) from Fish Epidermis: Perspectives for Investigative Dermatology
- (2013) Sebastian Rakers et al. JOURNAL OF INVESTIGATIVE DERMATOLOGY
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
- (2013) Christian Hoffmann et al. PLoS One
- Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota
- (2013) Sébastien Boutin et al. PLoS One
- Teleost skin, an ancient mucosal surface that elicits gut-like immune responses
- (2013) Z. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Staphylococcus warneri, a resident skin commensal of rainbow trout (Oncorhynchus mykiss) with pathobiont characteristics
- (2013) Rami Musharrafieh et al. VETERINARY MICROBIOLOGY
- Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut
- (2013) Elaine O Petrof et al. Microbiome
- The Human Microbiome: Our Second Genome
- (2012) Elizabeth A. Grice et al. Annual Review of Genomics and Human Genetics
- Enzyme-producing bacteria isolated from fish gut: a review
- (2012) A.K. Ray et al. AQUACULTURE NUTRITION
- Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
- (2012) KAREN E. SULLAM et al. MOLECULAR ECOLOGY
- Intestinal microbiota composition in fishes is influenced by host ecology and environment
- (2012) SANDI WONG et al. MOLECULAR ECOLOGY
- Phylogenetic Analysis of Microbial Communities in Different Regions of the Gastrointestinal Tract in Panaque nigrolineatus, a Wood-Eating Fish
- (2012) Ryan McDonald et al. PLoS One
- Regulation of immunity and disease resistance by commensal microbes and chromatin modifications during zebrafish development
- (2012) J. Galindo-Villegas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A protocol and cultivation system for gnotobiotic Atlantic cod larvae (Gadus morhua L.) as a tool to study host microbe interactions
- (2011) Torunn Forberg et al. AQUACULTURE
- Identification and characterization of lactic acid bacteria isolated from rainbow trout, Oncorhynchus mykiss (Walbaum), with inhibitory activity against Lactococcus garvieae
- (2011) T Pérez-Sánchez et al. JOURNAL OF FISH DISEASES
- Microflora in fish digestive tract plays significant role in digestion and metabolism
- (2011) S. Ganguly et al. REVIEWS IN FISH BIOLOGY AND FISHERIES
- The current status and future focus of probiotic and prebiotic applications for salmonids
- (2010) Daniel L. Merrifield et al. AQUACULTURE
- Identification of the adherent microbiota on the gills and skin of poly-cultured gibel carp (Carassius auratus gibelio) and bluntnose black bream (Megalobrama amblycephala Yih)
- (2010) Wenwen Wang et al. AQUACULTURE RESEARCH
- Microbiota of yellow grouper (Epinephelus awoora Temminck & Schlegel, 1842) fed two different diets
- (2010) Jing-Bin Feng et al. AQUACULTURE RESEARCH
- Role of gastrointestinal microbiota in fish
- (2010) Sukanta K Nayak AQUACULTURE RESEARCH
- Monitoring stress in fish by applying image analysis to their skin mucous cells
- (2010) I. N. Vatsos et al. EUROPEAN JOURNAL OF HISTOCHEMISTRY
- Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations
- (2010) INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Changes in skin mucus of common carp,Cyprinus carpioL., after exposure to water with a high bacterial load
- (2010) M van der Marel et al. JOURNAL OF FISH DISEASES
- Bacteria Grown on Natural Gas Prevent Soybean Meal-Induced Enteritis in Atlantic Salmon
- (2010) Odd H. Romarheim et al. JOURNAL OF NUTRITION
- Host–microbiota interactions within the fish intestinal ecosystem
- (2010) T Pérez et al. Mucosal Immunology
- IgT, a primitive immunoglobulin class specialized in mucosal immunity
- (2010) Yong-An Zhang et al. NATURE IMMUNOLOGY
- Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
- (2010) P. J. Turnbaugh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial competition: surviving and thriving in the microbial jungle
- (2009) Michael E. Hibbing et al. NATURE REVIEWS MICROBIOLOGY
- Human gut microbiome adopts an alternative state following small bowel transplantation
- (2009) A. L. Hartman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
- (2009) P. J. Turnbaugh et al. Science Translational Medicine
- Culture-independent characterization of the bacterial populations associated with cod (Gadus morhua L.) and live feed at an experimental hatchery facility using denaturing gradient gel electrophoresis
- (2008) Douglas McIntosh et al. AQUACULTURE
- The basics of bio-flocs technology: The added value for aquaculture
- (2008) P. De Schryver et al. AQUACULTURE
- A diversity profile of the human skin microbiota
- (2008) E. A. Grice et al. GENOME RESEARCH
- Functional metagenomic profiling of nine biomes
- (2008) Elizabeth A. Dinsdale et al. NATURE
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Worlds within worlds: evolution of the vertebrate gut microbiota
- (2008) Ruth E. Ley et al. NATURE REVIEWS MICROBIOLOGY
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