First Insights into the Diverse Human Archaeome: Specific Detection of Archaea in the Gastrointestinal Tract, Lung, and Nose and on Skin

Archaea Are Interactive Components of Complex Microbiomes

(2018) Christine Moissl-Eichinger et al.   TRENDS IN MICROBIOLOGY

Human age and skin physiology shape diversity and abundance of Archaea on skin

(2017) Christine Moissl-Eichinger et al.   Scientific Reports

Critical Issues in Mycobiota Analysis

(2017) Bettina Halwachs et al.   Frontiers in Microbiology

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions

(2016) Martha Zakrzewski et al.   BIOINFORMATICS

Influences of plant type on bacterial and archaeal communities in constructed wetland treating polluted river water

(2016) Yan Long et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Groundwater shapes sediment biogeochemistry and microbial diversity in a submerged Great Lake sinkhole

(2016) L. E. Kinsman-Costello et al.   Geobiology

Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases

(2016) Ryutaro Furukawa et al.   JOURNAL OF MOLECULAR EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs

(2016) Martin A. Fischer et al.   Frontiers in Microbiology

16S Based Microbiome Analysis from Healthy Subjects’ Skin Swabs Stored for Different Storage Periods Reveal Phylum to Genus Level Changes

(2016) Ingeborg Klymiuk et al.   Frontiers in Microbiology

Resilient microorganisms in dust samples of the International Space Station—survival of the adaptation specialists

(2016) Maximilian Mora et al.   Microbiome

Research on the human virome: where are we and what is next

(2016) Shimian Zou et al.   Microbiome

Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients

(2016) Robert Krause et al.   PLoS One

Archaea and the human gut: New beginning of an old story

(2016) Nadia Gaci et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Effects of high doses of vitamin D3 on mucosa-associated gut microbiome vary between regions of the human gastrointestinal tract

(2015) Mina Bashir et al.   EUROPEAN JOURNAL OF NUTRITION

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Archaea in and on the Human Body: Health Implications and Future Directions

(2015) Mor N. Lurie-Weinberger et al.   PLoS Pathogens

Microbiota of the indoor environment: a meta-analysis

(2015) Rachel I. Adams et al.   Microbiome

Microbial biogeography of a university campus

(2015) Ashley A. Ross et al.   Microbiome

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

Biogeography and individuality shape function in the human skin metagenome

(2014) Julia Oh et al.   NATURE

Dynamics and associations of microbial community types across the human body

(2014) Tao Ding et al.   NATURE

Increased Prevalence of Methanosphaera stadtmanae in Inflammatory Bowel Diseases

(2014) Pascale Blais Lecours et al.   PLoS One

Biofilm formation of mucosa-associated methanoarchaeal strains

(2014) Corinna Bang et al.   Frontiers in Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alteration of Intestinal Dysbiosis by Fecal Microbiota Transplantation Does not Induce Remission in Patients with Chronic Active Ulcerative Colitis

(2013) Patrizia K. Kump et al.   INFLAMMATORY BOWEL DISEASES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Archaea on Human Skin

(2013) Alexander J. Probst et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The emerging world of the fungal microbiome

(2013) Gary B. Huffnagle et al.   TRENDS IN MICROBIOLOGY

Methanogenic archaea in subgingival sites: a review

(2012) Tung Nguyen-Hieu et al.   APMIS

Age-related prevalence of Methanomassiliicoccus luminyensis in the human gut microbiome

(2012) Bédis Dridi et al.   APMIS

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces

(2012) B. Dridi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

A framework for human microbiome research

(2012)   NATURE

The keystone-pathogen hypothesis

(2012) George Hajishengallis et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

The proportional lack of archaeal pathogens: Do viruses/phages hold the key?

(2011) Erin E. Gill et al.   BIOESSAYS

Archaea: very diverse, often different but never bad?

(2011) John N Reeve et al.   CURRENT OPINION IN MICROBIOLOGY

Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions

(2011) Laura Wegener Parfrey et al.   Frontiers in Microbiology

MethanogenicArchaeaand oral infections – ways to unravel the black box

(2011) Hans-Peter Horz et al.   Journal of Oral Microbiology

Halophilic archaea in the human intestinal mucosa

(2010) Andrew P. A. Oxley et al.   ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Discussion Goes on: What Is the Role ofEuryarchaeotain Humans?

(2010) H.-P. Horz et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Syntrophy in anaerobic global carbon cycles

(2009) Michael J McInerney et al.   CURRENT OPINION IN BIOTECHNOLOGY

High Prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae Detected in the Human Gut Using an Improved DNA Detection Protocol

(2009) Bédis Dridi et al.   PLoS One

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Impact of the Intestinal Microbiota on the Development of Mucosal Defense

(2008) H. Rex Gaskins et al.   CLINICAL INFECTIOUS DISEASES

Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people

(2008) Young-Do Nam et al.   JOURNAL OF MICROBIOLOGY