Predictive functional profiles using metagenomic 16S rRNA data: a novel approach to understanding the microbial ecology of aquaculture systems
出版年份 2018 全文链接
标题
Predictive functional profiles using metagenomic 16S rRNA data: a novel approach to understanding the microbial ecology of aquaculture systems
作者
关键词
-
出版物
Reviews in Aquaculture
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2018-01-18
DOI
10.1111/raq.12237
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Unique Rhizosphere Micro-characteristics Facilitate Phytoextraction of Multiple Metals in Soil by the Hyperaccumulating Plant Sedum alfredii
- (2017) Dandi Hou et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation
- (2017) Susana Fuentes et al. ISME Journal
- Annual community patterns are driven by seasonal switching between closely related marine bacteria
- (2017) Christopher S Ward et al. ISME Journal
- Metagenomics approach to the study of the gut microbiome structure and function in zebrafish Danio rerio fed with gluten formulated diet
- (2017) Hyunmin Koo et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Biological Aging and the Human Gut Microbiota
- (2017) Vincent J Maffei et al. JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES
- The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals Differences in Composition and Potential Function
- (2017) Carolina Ramírez et al. Frontiers in Microbiology
- Human Catestatin Alters Gut Microbiota Composition in Mice
- (2017) Mohammad F. Rabbi et al. Frontiers in Microbiology
- Differences in Microbiota Membership along the Gastrointestinal Tract of Piglets and Their Differential Alterations Following an Early-Life Antibiotic Intervention
- (2017) Chunlong Mu et al. Frontiers in Microbiology
- Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane’s “species minimum” concept
- (2017) Christina Pavloudi et al. PeerJ
- Composition, diversity and function of intestinal microbiota in pacific white shrimp (Litopenaeus vannamei) at different culture stages
- (2017) Shenzheng Zeng et al. PeerJ
- Gut metagenomic analysis reveals prominent roles of Lactobacillus and cecal microbiota in chicken feed efficiency
- (2017) Wei Yan et al. Scientific Reports
- Chronic opioid use is associated with altered gut microbiota and predicts readmissions in patients with cirrhosis
- (2016) C. Acharya et al. ALIMENTARY PHARMACOLOGY & THERAPEUTICS
- Metagenomic analysis shows diverse, distinct bacterial communities in biofilters among different marine recirculating aquaculture systems
- (2016) Zhitao Huang et al. AQUACULTURE INTERNATIONAL
- Functional analysis for gut microbes of the brown tree frog (Polypedates megacephalus) in artificial hibernation
- (2016) Francis Cheng-Hsuan Weng et al. BMC GENOMICS
- From microbes to fish the next revolution in food production
- (2016) Luis Rafael Martínez-Córdova et al. CRITICAL REVIEWS IN BIOTECHNOLOGY
- Phylogenetic and functional characterization of the distal intestinal microbiome of rainbow troutOncorhynchus mykissfrom both farm and aquarium settings
- (2016) P.P. Lyons et al. JOURNAL OF APPLIED MICROBIOLOGY
- Reconstruction of metabolic networks in a fluoranthene-degrading enrichments from polycyclic aromatic hydrocarbon polluted soil
- (2016) Jian-Kang Zhao et al. JOURNAL OF HAZARDOUS MATERIALS
- Vikodak - A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets
- (2016) Sunil Nagpal et al. PLoS One
- The ecologist's field guide to sequence-based identification of biodiversity
- (2016) Simon Creer et al. Methods in Ecology and Evolution
- The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
- (2016) Han Liu et al. Scientific Reports
- Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon
- (2016) Jep Lokesh et al. Scientific Reports
- Honey Bee Gut Microbiome Is Altered by In-Hive Pesticide Exposures
- (2016) Madhavi L. Kakumanu et al. Frontiers in Microbiology
- Environment shapes the fecal microbiome of invasive carp species
- (2016) Jessica J. Eichmiller et al. Microbiome
- Monitoring and managing microbes in aquaculture - Towards a sustainable industry
- (2016) Mikkel Bentzon-Tilia et al. Microbial Biotechnology
- A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research
- (2016) Karina Gajardo et al. Scientific Reports
- Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes
- (2015) Daniel F. R. Cleary et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.
- (2015) Kathrin P. Aßhauer et al. BIOINFORMATICS
- Contemporary molecular tools in microbial ecology and their application to advancing biotechnology
- (2015) Mamoon Rashid et al. BIOTECHNOLOGY ADVANCES
- Metaproteomic analysis of bacterial communities in marine mudflat aquaculture sediment
- (2015) Rui Lin et al. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY
- Microbial metagenomics in aquaculture: a potential tool for a deeper insight into the activity
- (2015) Marcel Martínez-Porchas et al. Reviews in Aquaculture
- Perspective for Aquaponic Systems: “Omic” Technologies for Microbial Community Analysis
- (2015) Perla Munguia-Fragozo et al. Biomed Research International
- The Tara Oceans Project: New Opportunities and Greater Challenges Ahead
- (2015) Houjin Zhang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Ecological theory as a foundation to control pathogenic invasion in aquaculture
- (2014) Peter De Schryver et al. ISME Journal
- Which is more important for classifying microbial communities: who’s there or what they can do?
- (2014) Zhenjiang Xu et al. ISME Journal
- Microbial-based systems for aquaculture of fish and shrimp: an updated review
- (2014) Luis R. Martínez-Córdova et al. Reviews in Aquaculture
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Protein signature-based estimation of metagenomic abundances including all domains of life and viruses
- (2013) Heiner Klingenberg et al. BIOINFORMATICS
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- PATRIC, the bacterial bioinformatics database and analysis resource
- (2013) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- High Bacterial Diversity of Biological Soil Crusts in Water Tracks over Permafrost in the High Arctic Polar Desert
- (2013) Blaire Steven et al. PLoS One
- Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis
- (2013) Patrícia Martins et al. PLoS One
- Rickettsia-like organisms from cultured aquatic organisms, with emphasis on necrotizing hepatopancreatitis bacterium affecting penaeid shrimp: an overview on an emergent concern
- (2013) Teresa Gollas-Galván et al. Reviews in Aquaculture
- Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems
- (2012) Marc Auffret et al. FEMS MICROBIOLOGY ECOLOGY
- GenBank
- (2012) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Simultaneous Detection of Multiple Fish Pathogens Using a Naked-Eye Readable DNA Microarray
- (2012) Chin-I Chang et al. SENSORS
- Chapter 12: Human Microbiome Analysis
- (2012) Xochitl C. Morgan et al. PLoS Computational Biology
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project
- (2011) Jack A. Gilbert et al. Standards in Genomic Sciences
- Microbial diversity of biological filters in recirculating aquaculture systems
- (2010) Harold J Schreier et al. CURRENT OPINION IN BIOTECHNOLOGY
- Bioremediation of aquaculture wastewater using macroalgae and Artemia
- (2010) E. Marinho-Soriano et al. INTERNATIONAL BIODETERIORATION & BIODEGRADATION
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Characterization of Prochlorococcus clades from iron-depleted oceanic regions
- (2010) D. B. Rusch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- The NIH Human Microbiome Project
- (2009) et al. GENOME RESEARCH
- Next-Generation DNA Sequencing Methods
- (2008) Elaine R. Mardis Annual Review of Genomics and Human Genetics
- The biofloc technology (BFT) in indoor tanks: Water quality, biofloc composition, and growth and welfare of Nile tilapia (Oreochromis niloticus)
- (2008) M.E. Azim et al. AQUACULTURE
- A review on the interactions between gut microbiota and innate immunity of fish: Table 1
- (2008) Geovanny D. Gómez et al. FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
- (2008) C. E. Martinez-Guerrero et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started