Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut

Moving microbiota research toward establishing causal associations that represent viable targets for effective public health interventions

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Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations

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Beyond the inflammasome: regulatory NOD-like receptor modulation of the host immune response following virus exposure

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Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks

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Cross-species comparisons of host genetic associations with the microbiome

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Genetic and Transcriptional Analysis of Human Host Response to Healthy Gut Microbiota

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Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling

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MyD88 Signaling in T Cells Directs IgA-Mediated Control of the Microbiota to Promote Health

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Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations

(2015) Kathryn Milligan-Myhre et al.   Disease Models & Mechanisms

Genetic and environmental control of host-gut microbiota interactions

(2015) Elin Org et al.   GENOME RESEARCH

Role of Inflammasomes in Intestinal Inflammation and Crohnʼs Disease

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Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

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Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Among-lake reciprocal transplants induce convergent expression of immune genes in threespine stickleback

(2015) William E. Stutz et al.   MOLECULAR ECOLOGY

The role of regulatory variation in complex traits and disease

(2015) Frank W. Albert et al.   NATURE REVIEWS GENETICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

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Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing

(2015) Andrew M. Glazer et al.   G3-Genes Genomes Genetics

Site-specific programming of the host epithelial transcriptome by the gut microbiota

(2015) Felix Sommer et al.   GENOME BIOLOGY

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

(2015) Xochitl C Morgan et al.   GENOME BIOLOGY

Genome-Wide Association Studies of the Human Gut Microbiota

(2015) Emily R. Davenport et al.   PLoS One

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

NLRP6 Inflammasome Orchestrates the Colonic Host-Microbial Interface by Regulating Goblet Cell Mucus Secretion

(2014) Marta Wlodarska et al.   CELL

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

(2014) J. Gray Camp et al.   GENOME RESEARCH

Tempo and mode of regulatory evolution in Drosophila

(2014) J. D. Coolon et al.   GENOME RESEARCH

Inflammatory Bowel Disease as a Model for Translating the Microbiome

(2014) Curtis Huttenhower et al.   IMMUNITY

Genetic Evidence for Monogamy in the Dwarf Seahorse,Hippocampus zosterae

(2014) Emily Rose et al.   JOURNAL OF HEREDITY

Overexpressed NLRC3 Acts as an Anti-Inflammatory Cytosolic Protein

(2014) Yetiş Gültekin et al.   Journal of Innate Immunity

The Evolution and Adaptive Potential of Transcriptional Variation in Sticklebacks—Signatures of Selection and Widespread Heritability

(2014) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Inflammasomes and the microbiota—partners in the preservation of mucosal homeostasis

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Crosstalk between the coagulation and complement systems in sepsis

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Microbiota-Induced Changes in Drosophila melanogaster Host Gene Expression and Gut Morphology

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voom: precision weights unlock linear model analysis tools for RNA-seq read counts

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NOD-Like Receptors: Master Regulators of Inflammation and Cancer

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Commensal microbiota stimulate systemic neutrophil migration through induction of Serum amyloid A

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Animals in a bacterial world, a new imperative for the life sciences

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Transcription and redox enzyme activities: comparison of equilibrium and disequilibrium levels in the three-spined stickleback

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Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

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Ecological Succession of Bacterial Communities during Conventionalization of Germ-Free Mice

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Unraveling Inflammatory Responses using Systems Genetics and Gene-Environment Interactions in Macrophages

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Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

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Developmental dissociation in morphological evolution of the stickleback opercle

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Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis

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IL-22BP is regulated by the inflammasome and modulates tumorigenesis in the intestine

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The innate immune sensor NLRC3 attenuates Toll-like receptor signaling via modification of the signaling adaptor TRAF6 and transcription factor NF-κB

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Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits

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Microbial Colonization Induces Dynamic Temporal and Spatial Patterns of NF-κB Activation in the Zebrafish Digestive Tract

(2011) Michelle Kanther et al.   GASTROENTEROLOGY

Fast and SNP-tolerant detection of complex variants and splicing in short reads

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Expression Quantitative Trait Loci: Replication, Tissue- and Sex-Specificity in Mice

(2010) A. van Nas et al.   GENETICS

Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks

(2010) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

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Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

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A Genome-wide In Vitro Bacterial-Infection Screen Reveals Human Variation in the Host Response Associated with Inflammatory Disease

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Temporal Induction Pattern of STAT4 Target Genes Defines Potential for Th1 Lineage-Specific Programming

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Evolving gene expression: from G to E to G×E

(2009) Andrea Hodgins-Davis et al.   TRENDS IN ECOLOGY & EVOLUTION

Evolutionary mutant models for human disease

(2008) R. Craig Albertson et al.   TRENDS IN GENETICS

Gene expression variation in African and European populations of Drosophila melanogaster

(2008) Stephan Hutter et al.   GENOME BIOLOGY