Viromes As Genetic Reservoir for the Microbial Communities in Aquatic Environments: A Focus on Antimicrobial-Resistance Genes

Antibiotic and metal resistance in a ST395 Pseudomonas aeruginosa environmental isolate: A genomics approach

(2016) Pedro Teixeira et al.   MARINE POLLUTION BULLETIN

Virus-mediated archaeal hecatomb in the deep seafloor

(2016) R. Danovaro et al.   Science Advances

CS-SCORE: Rapid identification and removal of human genome contaminants from metagenomic datasets

(2015) Mohammed Monzoorul Haque et al.   GENOMICS

Heavy Metal Induced Antibiotic Resistance in Bacterium LSJC7

(2015) Songcan Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Tackling antibiotic resistance: the environmental framework

(2015) Thomas U. Berendonk et al.   NATURE REVIEWS MICROBIOLOGY

Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes

(2015) Shira R. Abeles et al.   PLoS One

High-Level Diversity of Tailed Phages, Eukaryote-Associated Viruses, and Virophage-Like Elements in the Metaviromes of Antarctic Soils

(2014) Olivier Zablocki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of ciprofloxacin-resistant isolates from a wastewater treatment plant and its receiving river

(2014) Elisabet Marti et al.   WATER RESEARCH

Generating viral metagenomes from the coral holobiont

(2014) Karen D. Weynberg et al.   Frontiers in Microbiology

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Potential impact of environmental bacteriophages in spreading antibiotic resistance genes

(2013) Maite Muniesa et al.   Future Microbiology

Differential Modulation of Human Intestinal Bifidobacterium Populations after Consumption of a Wild Blueberry (Vaccinium angustifolium) Drink

(2013) Simone Guglielmetti et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome

(2013) Sheetal R. Modi et al.   NATURE

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences

(2013) S. Roux et al.   Open Biology

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

(2012) Laura Fancello et al.   ISME Journal

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics

(2012) Simon Roux et al.   PLoS One

Metagenomic Exploration of Viruses throughout the Indian Ocean

(2012) Shannon J. Williamson et al.   PLoS One

Antibiotic Resistance Gene Abundances Correlate with Metal and Geochemical Conditions in Archived Scottish Soils

(2011) Charles W. Knapp et al.   PLoS One

Aquatic systems: maintaining, mixing and mobilising antimicrobial resistance?

(2011) Nick G.H. Taylor et al.   TRENDS IN ECOLOGY & EVOLUTION

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

Metagenomic analysis of viruses in reclaimed water

(2009) Karyna Rosario et al.   ENVIRONMENTAL MICROBIOLOGY

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

Interactions between trophic and toxic factors in a polluted urban river

(2007) L. Viganò et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY