Tracing human stem cell lineage during development using DNA methylation
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Tracing human stem cell lineage during development using DNA methylation
Authors
Keywords
-
Journal
GENOME RESEARCH
Volume 28, Issue 9, Pages 1285-1295
Publisher
Cold Spring Harbor Laboratory
Online
2018-08-03
DOI
10.1101/gr.233213.117
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Fetal monocytes and the origins of tissue-resident macrophages
- (2018) Guillaume Hoeffel et al. CELLULAR IMMUNOLOGY
- Cell-type deconvolution from DNA methylation: a review of recent applications
- (2017) Alexander J. Titus et al. HUMAN MOLECULAR GENETICS
- Clonal Hematopoiesis and Atherosclerosis
- (2017) NEW ENGLAND JOURNAL OF MEDICINE
- Maternal blood contamination of collected cord blood can be identified using DNA methylation at three CpGs
- (2017) Alexander M. Morin et al. Clinical Epigenetics
- Expansion of Human Tregs from Cryopreserved Umbilical Cord Blood for GMP-Compliant Autologous Adoptive Cell Transfer Therapy
- (2017) Howard R. Seay et al. Molecular Therapy-Methods & Clinical Development
- Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)
- (2016) Devin C. Koestler et al. BMC BIOINFORMATICS
- DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation
- (2016) Matthias Farlik et al. Cell Stem Cell
- Cell type specific DNA methylation in cord blood: A 450K-reference data set and cell count-based validation of estimated cell type composition
- (2016) Kristina Gervin et al. Epigenetics
- DNA methylation of cord blood cell types: Applications for mixed cell birth studies
- (2016) Kelly M. Bakulski et al. Epigenetics
- Ezh2 regulates the Lin28/let-7 pathway to restrict activation of fetal gene signature in adult hematopoietic stem cells
- (2016) Motohiko Oshima et al. EXPERIMENTAL HEMATOLOGY
- Pervasive polymorphic imprinted methylation in the human placenta
- (2016) Courtney W. Hanna et al. GENOME RESEARCH
- Hematopoietic Stem Cells Are the Major Source of Multilineage Hematopoiesis in Adult Animals
- (2016) Catherine M. Sawai et al. IMMUNITY
- Developmental regulation of myeloerythroid progenitor function by theLin28b–let-7–Hmga2axis
- (2016) R. Grant Rowe et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Longitudinal study of DNA methylation during the first 5 years of life
- (2016) Rocio G. Urdinguio et al. Journal of Translational Medicine
- Lin28A Binds Active Promoters and Recruits Tet1 to Regulate Gene Expression
- (2016) Yaxue Zeng et al. MOLECULAR CELL
- Whole-organism lineage tracing by combinatorial and cumulative genome editing
- (2016) Aaron McKenna et al. SCIENCE
- Epigenetic clock analyses of cellular senescence and ageing
- (2016) Donna Lowe et al. Oncotarget
- Mitotic History Reveals Distinct Stem Cell Populations and Their Contributions to Hematopoiesis
- (2016) Petter Säwén et al. Cell Reports
- Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium
- (2016) Nathan Salomonis et al. Stem Cell Reports
- Layered evolution in the immune system: a view from history
- (2015) Leonore A. Herzenberg Annals of the New York Academy of Sciences
- Hematopoietic stem cell-independent B-1a lineage
- (2015) Eliver Eid Bou Ghosn et al. Annals of the New York Academy of Sciences
- missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform
- (2015) Belinda Phipson et al. BIOINFORMATICS
- Hematopoietic stem cells: concepts, definitions, and the new reality
- (2015) C. J. Eaves BLOOD
- The idiopathic preterm delivery methylation profile in umbilical cord blood DNA
- (2015) Febilla Fernando et al. BMC GENOMICS
- Perspectives on fetal derived CD5+B1 B cells
- (2015) Richard R. Hardy et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Methylomic trajectories across human fetal brain development
- (2015) Helen Spiers et al. GENOME RESEARCH
- Fundamental properties of unperturbed haematopoiesis from stem cells in vivo
- (2015) Katrin Busch et al. NATURE
- Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex
- (2015) Andrew E Jaffe et al. NATURE NEUROSCIENCE
- ORegAnno 3.0: a community-driven resource for curated regulatory annotation
- (2015) Robert Lesurf et al. NUCLEIC ACIDS RESEARCH
- ENCODE data at the ENCODE portal
- (2015) Cricket A. Sloan et al. NUCLEIC ACIDS RESEARCH
- An LSC epigenetic signature is largely mutation independent and implicates the HOXA cluster in AML pathogenesis
- (2015) Namyoung Jung et al. Nature Communications
- Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes
- (2015) Liina Tserel et al. Scientific Reports
- Comparison of DNA methylation profiles in human fetal and adult red blood cell progenitors
- (2015) Samuel Lessard et al. Genome Medicine
- DNA Methylation Landscapes of Human Fetal Development
- (2015) Roderick C. Slieker et al. PLoS Genetics
- Biogenesis and regulation of the let-7 miRNAs and their functional implications
- (2015) Hosuk Lee et al. Protein & Cell
- Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human blood leukocytes
- (2015) Nathalie Acevedo et al. Clinical Epigenetics
- Nucleated red blood cells impact DNA methylation and expression analyses of cord blood hematopoietic cells
- (2015) Olivia M. de Goede et al. Clinical Epigenetics
- Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation
- (2014) M. Ronnerblad et al. BLOOD
- Genetic and epigenetic regulation of gene expression in fetal and adult human livers
- (2014) Marc Bonder et al. BMC GENOMICS
- Epigenomic Profiling of Young and Aged HSCs Reveals Concerted Changes during Aging that Reinforce Self-Renewal
- (2014) Deqiang Sun et al. Cell Stem Cell
- Reprogramming the Methylome: Erasing Memory and Creating Diversity
- (2014) Heather J. Lee et al. Cell Stem Cell
- Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells
- (2014) Zakary S. Singer et al. MOLECULAR CELL
- Clonal dynamics of native haematopoiesis
- (2014) Jianlong Sun et al. NATURE
- Age-Related Clonal Hematopoiesis Associated with Adverse Outcomes
- (2014) Siddhartha Jaiswal et al. NEW ENGLAND JOURNAL OF MEDICINE
- Statistical challenges of high-dimensional methylation data
- (2014) Maral Saadati et al. STATISTICS IN MEDICINE
- Prenatal Arsenic Exposure and the Epigenome: Identifying Sites of 5-methylcytosine Alterations that Predict Functional Changes in Gene Expression in Newborn Cord Blood and Subsequent Birth Outcomes
- (2014) Daniel Rojas et al. TOXICOLOGICAL SCIENCES
- Quantitative reconstruction of leukocyte subsets using DNA methylation
- (2014) William P Accomando et al. GENOME BIOLOGY
- A data-driven approach to preprocessing Illumina 450K methylation array data
- (2013) Ruth Pidsley et al. BMC GENOMICS
- Proliferation-Dependent Alterations of the DNA Methylation Landscape Underlie Hematopoietic Stem Cell Aging
- (2013) Isabel Beerman et al. Cell Stem Cell
- Polycomb Repressive Complex 2 Regulates Normal Hematopoietic Stem Cell Function in a Developmental-Stage-Specific Manner
- (2013) Huafeng Xie et al. Cell Stem Cell
- A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression
- (2013) Jerry Guintivano et al. Epigenetics
- An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
- (2013) Francesco Marabita et al. Epigenetics
- The Lin28b–let-7–Hmga2 axis determines the higher self-renewal potential of fetal haematopoietic stem cells
- (2013) Michael R. Copley et al. NATURE CELL BIOLOGY
- Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array
- (2013) Roderick C Slieker et al. Epigenetics & Chromatin
- Hematopoietic Stem and Progenitor Cells Acquire Distinct DNA-Hypermethylation During in vitro Culture
- (2013) Carola Ingrid Weidner et al. Scientific Reports
- DNA methylation age of human tissues and cell types
- (2013) Steve Horvath GENOME BIOLOGY
- Stem cell heterogeneity: implications for aging and regenerative medicine
- (2012) C. E. Muller-Sieburg et al. BLOOD
- DNA methylation arrays as surrogate measures of cell mixture distribution
- (2012) Eugene Houseman et al. BMC BIOINFORMATICS
- Recurrent Variations in DNA Methylation in Human Pluripotent Stem Cells and Their Differentiated Derivatives
- (2012) Kristopher L. Nazor et al. Cell Stem Cell
- Age-associated DNA methylation in pediatric populations
- (2012) R. S. Alisch et al. GENOME RESEARCH
- Suppression of the let-7b microRNA pathway by DNA hypermethylation in infant acute lymphoblastic leukemia with MLL gene rearrangements
- (2012) M Nishi et al. LEUKEMIA
- Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates
- (2012) Gregory Hannum et al. MOLECULAR CELL
- ENCODE Data in the UCSC Genome Browser: year 5 update
- (2012) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Differential DNA Methylation in Purified Human Blood Cells: Implications for Cell Lineage and Studies on Disease Susceptibility
- (2012) Lovisa E. Reinius et al. PLoS One
- Distinct DNA methylomes of newborns and centenarians
- (2012) H. Heyn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lin28b Reprograms Adult Bone Marrow Hematopoietic Progenitors to Mediate Fetal-Like Lymphopoiesis
- (2012) Joan Yuan et al. SCIENCE
- Molecular signatures database (MSigDB) 3.0
- (2011) A. Liberzon et al. BIOINFORMATICS
- Dependency on the polycomb gene Ezh2 distinguishes fetal from adult hematopoietic stem cells
- (2011) M. Mochizuki-Kashio et al. BLOOD
- Lin28A and Lin28B Inhibit let-7 MicroRNA Biogenesis by Distinct Mechanisms
- (2011) Elena Piskounova et al. CELL
- Sox17 expression confers self-renewal potential and fetal stem cell characteristics upon adult hematopoietic progenitors
- (2011) S. He et al. GENES & DEVELOPMENT
- Human B1 cells are CD3−: A reply to “A human equivalent of mouse B-1 cells?” and “The nature of circulating CD27+CD43+B cells”: Figure 1.
- (2011) Daniel O. Griffin et al. JOURNAL OF EXPERIMENTAL MEDICINE
- A human equivalent of mouse B-1 cells?: Figure 1.
- (2011) Marc Descatoire et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
- (2010) Pan Du et al. BMC BIOINFORMATICS
- Comprehensive methylome map of lineage commitment from haematopoietic progenitors
- (2010) Hong Ji et al. NATURE
- Opposing microRNA families regulate self-renewal in mouse embryonic stem cells
- (2010) Collin Melton et al. NATURE
- Epigenetic memory in induced pluripotent stem cells
- (2010) K. Kim et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
- (2009) J. Chen et al. NUCLEIC ACIDS RESEARCH
- Stems Cells and the Pathways to Aging and Cancer
- (2008) Derrick J. Rossi et al. CELL
- Hematopoiesis: An Evolving Paradigm for Stem Cell Biology
- (2008) Stuart H. Orkin et al. CELL
- Determinants of MicroRNA Processing Inhibition by the Developmentally Regulated RNA-binding Protein Lin28
- (2008) Elena Piskounova et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment
- (2008) Agnieszka Rybak et al. NATURE CELL BIOLOGY
- Effect of In Utero and Early-Life Conditions on Adult Health and Disease
- (2008) Peter D. Gluckman et al. NEW ENGLAND JOURNAL OF MEDICINE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started