Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array
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Title
Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array
Authors
Keywords
Differentially methylated region, Illumina 450k, Annotation, Algorithm, Tissue
Journal
Epigenetics & Chromatin
Volume 6, Issue 1, Pages 26
Publisher
Springer Nature
Online
2013-08-06
DOI
10.1186/1756-8935-6-26
References
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Related references
Note: Only part of the references are listed.- The Genotype-Tissue Expression (GTEx) project
- (2013) John Lonsdale et al. NATURE GENETICS
- DNA Methylation Signatures in Development and Aging of the Human Prefrontal Cortex
- (2012) Shusuke Numata et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Programming of DNA Methylation Patterns
- (2012) Howard Cedar et al. Annual Review of Biochemistry
- CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression
- (2012) Raghunath Chatterjee et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Epigenetic features are significantly associated with alternative splicing
- (2012) Yuanpeng Zhou et al. BMC GENOMICS
- Commentary: The seven plagues of epigenetic epidemiology
- (2012) Bastiaan T Heijmans et al. INTERNATIONAL JOURNAL OF EPIDEMIOLOGY
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
- Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood
- (2012) Matthew N Davies et al. GENOME BIOLOGY
- Docosahexaenoic acid suppresses apolipoprotein A-I gene expression through hepatocyte nuclear factor-3β
- (2011) Yu-Lin Kuang et al. AMERICAN JOURNAL OF CLINICAL NUTRITION
- Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
- (2011) Ping Liang et al. BMC GENOMICS
- Cell type-specific DNA methylation at intragenic CpG islands in the immune system
- (2011) A. M. Deaton et al. GENOME RESEARCH
- Tissue-specific demethylation in CpG-poor promoters during cellular differentiation
- (2011) Genta Nagae et al. HUMAN MOLECULAR GENETICS
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Evaluation of the Infinium Methylation 450K technology
- (2011) Sarah Dedeurwaerder et al. Epigenomics
- DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
- (2011) Jordana T Bell et al. GENOME BIOLOGY
- Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology
- (2010) Rudolf P. Talens et al. FASEB JOURNAL
- Dynamic changes in the human methylome during differentiation
- (2010) L. Laurent et al. GENOME RESEARCH
- Conserved role of intragenic DNA methylation in regulating alternative promoters
- (2010) Alika K. Maunakea et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- The DNA Methylome of Human Peripheral Blood Mononuclear Cells
- (2010) Yingrui Li et al. PLOS BIOLOGY
- Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns
- (2009) Hyang-Min Byun et al. HUMAN MOLECULAR GENETICS
- The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
- (2009) Rafael A Irizarry et al. NATURE GENETICS
- Genetics and epigenetics: stability and plasticity during cellular differentiation
- (2009) Fabio Mohn et al. TRENDS IN GENETICS
- Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development
- (2008) N. Gao et al. GENES & DEVELOPMENT
- DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression
- (2008) S. Yagi et al. GENOME RESEARCH
- An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
- (2008) V. K. Rakyan et al. GENOME RESEARCH
- Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development
- (2008) Fei Song et al. GENOMICS
- ASTD: The Alternative Splicing and Transcript Diversity database
- (2008) Gautier Koscielny et al. GENOMICS
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Male-pattern baldness susceptibility locus at 20p11
- (2008) J Brent Richards et al. NATURE GENETICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- A Novel CpG Island Set Identifies Tissue-Specific Methylation at Developmental Gene Loci
- (2008) Robert Illingworth et al. PLOS BIOLOGY
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