Phylogenomic Study Indicates Widespread Lateral Gene Transfer in Entamoeba and Suggests a Past Intimate Relationship with Parabasalids

Horizontal Gene Transfer and Redundancy of Tryptophan Biosynthetic Enzymes in Dinotoms

(2014) Behzad Imanian et al.   Genome Biology and Evolution

Free-living ciliates as potential reservoirs for eukaryotic parasites: occurrence of a trypanosomatid in the macronucleus of Euplotes encysticus

(2014) Sergei I Fokin et al.   Parasites & Vectors

One Alga to Rule them All: Unrelated Mixotrophic Testate Amoebae (Amoebozoa, Rhizaria and Stramenopiles) Share the Same Symbiont (Trebouxiophyceae)

(2014) Fatma Gomaa et al.   PROTIST

Genome reduction as the dominant mode of evolution

(2013) Yuri I. Wolf et al.   BIOESSAYS

Exploring the costs of horizontal gene transfer

(2013) David A. Baltrus   TRENDS IN ECOLOGY & EVOLUTION

Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes

(2013) Cecilia Alsmark et al.   GENOME BIOLOGY

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

(2013) Michael Clarke et al.   GENOME BIOLOGY

Convergent evolution in structural elements of proteins investigated using cross profile analysis

(2012) Kentaro Tomii et al.   BMC BIOINFORMATICS

An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales

(2012) Phuong Le et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of Fe/S cluster biogenesis in the anaerobic parasite Blastocystis

(2012) A. D. Tsaousis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Characterization of Neoparamoeba pemaquidensis (Amoebozoa) and Its Kinetoplastid Endosymbiont

(2011) Goro Tanifuji et al.   EUKARYOTIC CELL

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

(2011) Kevin Liu et al.   PLoS One

Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires

(2011) Christian M Zmasek et al.   GENOME BIOLOGY

The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer

(2010) O. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

GUIDANCE: a web server for assessing alignment confidence scores

(2010) O. Penn et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Intermediary Metabolism in Protists: a Sequence-based View of Facultative Anaerobic Metabolism in Evolutionarily Diverse Eukaryotes

(2010) Michael L. Ginger et al.   PROTIST

New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information

(2010) Hernan A. Lorenzi et al.   PLoS Neglected Tropical Diseases

Functional and ecological impacts of horizontal gene transfer in eukaryotes

(2009) Patrick J Keeling   CURRENT OPINION IN GENETICS & DEVELOPMENT

Inference and Characterization of Horizontally Transferred Gene Families Using Stochastic Mapping

(2009) O. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic Distributions and Histories of Proteins Involved in Anaerobic Pyruvate Metabolism in Eukaryotes

(2009) L. A. Hug et al.   MOLECULAR BIOLOGY AND EVOLUTION

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Targeting a Prokaryotic Protein in a Eukaryotic Pathogen: Identification of Lead Compounds against Cryptosporidiosis

(2008) Nwakaso N. Umejiego et al.   CHEMISTRY & BIOLOGY

Euplotespora binucleatan. gen., n. sp. (Protozoa: Microsporidia), a Parasite Infecting the Hypotrichous CiliateEuplotes woodruffi, with Observations on Microsporidian Infections in Ciliophora

(2008) SERGEI I. FOKIN et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY