Inference and Characterization of Horizontally Transferred Gene Families Using Stochastic Mapping

A Phylogenetic Mixture Model for Gene Family Loss in Parasitic Bacteria

(2009) Matthew Spencer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

(2009) J. D. O'Brien et al.   MOLECULAR BIOLOGY AND EVOLUTION

The tree of genomes: An empirical comparison of genome phylogeny reconstruction methods.

(2008) Angela McCann et al.   BMC EVOLUTIONARY BIOLOGY

Uncovering rate variation of lateral gene transfer during bacterial genome evolution

(2008) Weilong Hao et al.   BMC GENOMICS

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

(2008) E. V. Koonin et al.   NUCLEIC ACIDS RESEARCH

Fast, accurate and simulation-free stochastic mapping

(2008) V. N Minin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A likelihood framework to analyse phyletic patterns

(2008) O. Cohen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA