Genome reduction as the dominant mode of evolution

Origin and evolution of spliceosomal introns

(2012) Igor B Rogozin et al.   Biology Direct

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

(2012) Yuri I Wolf et al.   Biology Direct

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

The Origins of Cooperative Bacterial Communities

(2012) J. L. Sachs et al.   mBio

Rhizome of life, catastrophes, sequence exchanges, gene creations, and giant viruses: how microbial genomics challenges Darwin

(2012) Vicky Merhej et al.   Frontiers in Cellular and Infection Microbiology

Determining the evolutionary history of gene families

(2011) Ryan M. Ames et al.   BIOINFORMATICS

Energetics and genetics across the prokaryote-eukaryote divide

(2011) Nick Lane   Biology Direct

Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits

(2011) John Larsson et al.   BMC EVOLUTIONARY BIOLOGY

Differences in lateral gene transfer in hypersaline versus thermal environments

(2011) Matthew E Rhodes et al.   BMC EVOLUTIONARY BIOLOGY

The intriguing nature of microsporidian genomes

(2011) N. Corradi et al.   Briefings in Functional Genomics

Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony—A Simulation Study

(2011) Ofir Cohen et al.   Genome Biology and Evolution

Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids

(2011) Gaelen R. Burke et al.   Genome Biology and Evolution

Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade

(2011) J. Viklund et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metabolic modeling of endosymbiont genome reduction on a temporal scale

(2011) K. Yizhak et al.   Molecular Systems Biology

Bacterial symbionts in insects or the story of communities affecting communities

(2011) J. Ferrari et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes

(2011) Miklos Csuros et al.   PLoS Computational Biology

Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont Buchnera

(2011) Patrick H. Degnan et al.   PLoS Genetics

Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires

(2011) Christian M Zmasek et al.   GENOME BIOLOGY

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

(2010) M. Csuos   BIOINFORMATICS

Rickettsial evolution in the light of comparative genomics

(2010) Vicky Merhej et al.   BIOLOGICAL REVIEWS

The Incredible Expanding Ancestor of Eukaryotes

(2010) Eugene V. Koonin   CELL

The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

(2010) Lillian K. Fritz-Laylin et al.   CELL

The energetics of genome complexity

(2010) Nick Lane et al.   NATURE

Evolution of diverse cell division and vesicle formation systems in Archaea

(2010) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Diversity and reductive evolution of mitochondria among microbial eukaryotes

(2010) K. Hjort et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The origin and early evolution of eukaryotes in the light of phylogenomics

(2010) Eugene V Koonin   GENOME BIOLOGY

Nucleomorph Genomes

(2009) Christa E. Moore et al.   Annual Review of Genetics

Prochlorococcus: Advantages and Limits of Minimalism

(2009) Frédéric Partensky et al.   Annual Review of Marine Science

Deletional Bias across the Three Domains of Life

(2009) Chih-Horng Kuo et al.   Genome Biology and Evolution

Streamlining and Large Ancestral Genomes in Archaea Inferred with a Phylogenetic Birth-and-Death Model

(2009) M. Csuros et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional diversity of ankyrin repeats in microbial proteins

(2009) Souhaila Al-Khodor et al.   TRENDS IN MICROBIOLOGY

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Host-bacterial coevolution and the search for new drug targets

(2008) Jesse Zaneveld et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

POPULATION STRUCTURE, LEVELS OF SELECTION, AND THE EVOLUTION OF INTRACELLULAR SYMBIONTS

(2008) Brendan O'Fallon   EVOLUTION

Evolution of genome architecture

(2008) Eugene V. Koonin   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

(2008) P. S. Novichkov et al.   JOURNAL OF BACTERIOLOGY

Extremely Intron-Rich Genes in the Alveolate Ancestors Inferred with a Flexible Maximum-Likelihood Approach

(2008) M. Csuros et al.   MOLECULAR BIOLOGY AND EVOLUTION

A likelihood framework to analyse phyletic patterns

(2008) O. Cohen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1

(2008) Jimmy H Saw et al.   GENOME BIOLOGY