Domestication and the Mitochondrial Genome: Comparing Patterns and Rates of Molecular Evolution in Domesticated Mammals and Birds and Their Wild Relatives

Reconstructing the Phylogenetic History of Long-Term Effective Population Size and Life-History Traits Using Patterns of Amino Acid Replacement in Mitochondrial Genomes of Mammals and Birds

(2013) Benoit Nabholz et al.   Genome Biology and Evolution

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

(2012) John G. Gibbons et al.   CURRENT BIOLOGY

Accumulation of slightly deleterious mutations in the mitochondrial genome: A hallmark of animal domestication

(2012) Austin L. Hughes   GENE

Modern Taurine Cattle Descended from Small Number of Near-Eastern Founders

(2012) R. Bollongino et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

The Lower Bound to the Evolution of Mutation Rates

(2011) Michael Lynch   Genome Biology and Evolution

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA

(2011) Andreia J. Amaral et al.   PLoS One

Domestication Relaxed Selective Constraints on the Yak Mitochondrial Genome

(2010) Zhaofeng Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Tracking footprints of artificial selection in the dog genome

(2010) J. M. Akey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

High mitochondrial differentiation levels between wild and domestic Bactrian camels: a basis for rapid detection of maternal hybridization

(2009) K. Silbermayr et al.   ANIMAL GENETICS

Why do species vary in their rate of molecular evolution?

(2009) L. Bromham   Biology Letters

Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

(2009) Sean MacEachern et al.   BMC GENOMICS

Genetic diversity of European cattle breeds highlights the conservation value of traditional unselected breeds with high effective population size

(2009) IVICA MEDUGORAC et al.   MOLECULAR ECOLOGY

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

(2009) James W. Kijas et al.   PLoS One

From wild animals to domestic pets, an evolutionary view of domestication

(2009) C. A. Driscoll et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx)

(2009) Q. Xia et al.   SCIENCE

Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs

(2009) Meiying Fang et al.   PLoS Genetics

The Legacy of Domestication: Accumulation of Deleterious Mutations in the Dog Genome

(2008) F. Cruz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient vs. recent processes as factors shaping the genetic variation of the European wild boar: are the effects of the last glaciation still detectable?

(2008) M. SCANDURA et al.   MOLECULAR ECOLOGY

The genetic expectations of a protracted model for the origins of domesticated crops

(2008) R. G. Allaby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

The effect of domestication on the fungal proteome

(2008) Antonis Rokas   TRENDS IN GENETICS