Landscape genomics provides evidence of climate-associated genetic variation in Mexican populations of Quercus rugosa

Applying landscape genomic tools to forest management and restoration of Hawaiian koa (Acacia koa ) in a changing environment

(2017) Paul F. Gugger et al.   Evolutionary Applications

Genomic Studies of Local Adaptation in Natural Plant Populations

(2017) Victoria L Sork   JOURNAL OF HEREDITY

An integrated framework to identify wildlife populations under threat from climate change

(2017) Orly Razgour et al.   Molecular Ecology Resources

Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata

(2016) V. L. Sork et al.   AMERICAN JOURNAL OF BOTANY

Signatures of local adaptation in candidate genes of oaks (Quercusspp.) with respect to present and future climatic conditions

(2016) Christian Rellstab et al.   MOLECULAR ECOLOGY

Association of transcriptome-wide sequence variation with climate gradients in valley oak (Quercus lobata)

(2016) Paul F. Gugger et al.   Tree Genetics & Genomes

Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks

(2015) Shawn J. Cokus et al.   BMC GENOMICS

Constraints to and conservation implications for climate change adaptation in plants

(2015) Matthew J. Christmas et al.   CONSERVATION GENETICS

Time to get moving: assisted gene flow of forest trees

(2015) Sally N. Aitken et al.   Evolutionary Applications

Gene flow and natural selection shape spatial patterns of genes in tree populations: implications for evolutionary processes and applications

(2015) Victoria L. Sork   Evolutionary Applications

The population genomic signature of environmental selection in the widespread insect-pollinated tree species Frangula alnus at different geographical scales

(2015) H De Kort et al.   HEREDITY

Biodiversity in the Mexican highlands and the interaction of geology, geography and climate within the Trans-Mexican Volcanic Belt

(2015) Alicia Mastretta-Yanes et al.   JOURNAL OF BIOGEOGRAPHY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genomic variation across landscapes: insights and applications

(2015) Jason G. Bragg et al.   NEW PHYTOLOGIST

Climatic origins predict variation in photoprotective leaf pigments in response to drought and low temperatures in live oaks (Quercus series Virentes)

(2015) J. A. Ramirez-Valiente et al.   TREE PHYSIOLOGY

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Molecular Proxies for Climate Maladaptation in a Long-Lived Tree (Pinus pinaster Aiton, Pinaceae)

(2014) J.-P. Jaramillo-Correa et al.   GENETICS

Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree speciesAlnus glutinosa

(2014) Hanne De Kort et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

Ecological Speciation in Nolina parviflora (Asparagaceae): Lacking Spatial Connectivity along of the Trans-Mexican Volcanic Belt

(2014) Eduardo Ruiz-Sanchez et al.   PLoS One

Efecto de la reproducción clonal en la estructura genética de Pentaclethra macroloba (Fabaceae: Mimosoideae)

(2014) Keith D. Gaddis et al.   REVISTA DE BIOLOGIA TROPICAL

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

(2013) Matthew R. Jones et al.   EVOLUTION

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Climate Change Projections over East Asia with BCC_CSM1.1 Climate Model under RCP Scenarios

(2013) Xiaoge XIN et al.   JOURNAL OF THE METEOROLOGICAL SOCIETY OF JAPAN

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracking climate change in a dispersal-limited species: reduced spatial and genetic connectivity in a montane salamander

(2013) G. Velo-Antón et al.   MOLECULAR ECOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics

(2013) Stéphane Joost et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Insights into drought adaptation of two European oak species revealed by nucleotide diversity of candidate genes

(2013) Andreas Homolka et al.   Tree Genetics & Genomes

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Forecasting changes in population genetic structure of alpine plants in response to global warming

(2012) FLORA JAY et al.   MOLECULAR ECOLOGY

Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis

(2012) Hui Yuan et al.   PLANT JOURNAL

Arabidopsis MKK4 mediates osmotic-stress response via its regulation of MPK3 activity

(2011) Sun-Ho Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing

(2011) Brian Walenz et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Tracing the origins of widespread highland species: a case of Neogene diversification across the Mexican sierras in an endemic lizard

(2011) ROBERT W. BRYSON JR et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A mass-flux cumulus parameterization scheme for large-scale models: description and test with observations

(2011) Tongwen Wu   CLIMATE DYNAMICS

Climate change in Central America and Mexico: regional climate model validation and climate change projections

(2011) Ambarish V. Karmalkar et al.   CLIMATE DYNAMICS

Gradient forests: calculating importance gradients on physical predictors

(2011) Nick Ellis et al.   ECOLOGY

Isolation in habitat refugia promotes rapid diversification in a montane tropical salamander

(2011) Gabriela Parra-Olea et al.   JOURNAL OF BIOGEOGRAPHY

Adaptive responses for seed and leaf phenology in natural populations of sessile oak along an altitudinal gradient

(2011) F. ALBERTO et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Temperature-related natural selection in a wind-pollinated tree across regional and continental scales

(2011) K. COX et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Evidence for a freezing tolerance-growth rate trade-off in the live oaks (Quercus series Virentes) across the tropical-temperate divide

(2011) Kari Koehler et al.   NEW PHYTOLOGIST

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

The Genomic Basis of Local Climatic Adaptation

(2011) O. Savolainen   SCIENCE

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Improved Climate Simulation by MIROC5: Mean States, Variability, and Climate Sensitivity

(2010) Masahiro Watanabe et al.   JOURNAL OF CLIMATE

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina

(2010) S. MANEL et al.   MOLECULAR ECOLOGY

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

(2010) STÉPHANIE MANEL et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Adaptations to new environments in humans: the role of subtle allele frequency shifts

(2010) A. M. Hancock et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid

(2010) J. Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spline models of contemporary, 2030, 2060 and 2090 climates for Mexico and their use in understanding climate-change impacts on the vegetation

(2009) Cuauhtémoc Sáenz-Romero et al.   CLIMATIC CHANGE

Ecological genetics and seed transfer guidelines for Pinus albicaulis (Pinaceae)

(2008) Andrew D. Bower et al.   AMERICAN JOURNAL OF BOTANY

Conditional Variable Importance for Random Forests

(2008) Carolin Strobl et al.   BMC BIOINFORMATICS

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Foliar morphological variation in the white oak Quercus rugosa Née (Fagaceae) along a latitudinal gradient in Mexico: Potential implications for management and conservation

(2008) Dolores Uribe-Salas et al.   FOREST ECOLOGY AND MANAGEMENT

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Conserving the evolutionary potential of California valley oak (Quercus lobataNée): a multivariate genetic approach to conservation planning

(2007) DELPHINE GRIVET et al.   MOLECULAR ECOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources