Culture History and Population Heterogeneity as Determinants of Bacterial Adaptation: the Adaptomics of a Single Environmental Transition
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Title
Culture History and Population Heterogeneity as Determinants of Bacterial Adaptation: the Adaptomics of a Single Environmental Transition
Authors
Keywords
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Journal
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
Volume 76, Issue 3, Pages 597-625
Publisher
American Society for Microbiology
Online
2012-08-30
DOI
10.1128/mmbr.05028-11
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Note: Only part of the references are listed.- Stress, Sublethal Injury, Resuscitation, and Virulence of Bacterial Foodborne Pathogens
- (2016) ALISSA M. WESCHE et al. JOURNAL OF FOOD PROTECTION
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- (2011) G. Vieira et al. JOURNAL OF BACTERIOLOGY
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- Close encounters: contact-dependent interactions in bacteria
- (2011) Anna Konovalova et al. MOLECULAR MICROBIOLOGY
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- (2011) T. M. Conrad et al. Molecular Systems Biology
- A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011
- (2011) J. D. Orth et al. Molecular Systems Biology
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- (2011) Robert E. Beardmore et al. NATURE
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- (2011) Balázs Papp et al. NATURE REVIEWS GENETICS
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- Noise and Robustness in Prokaryotic Regulatory Networks
- (2010) Rafael Silva-Rocha et al. Annual Review of Microbiology
- Persister Cells
- (2010) Kim Lewis Annual Review of Microbiology
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- Increased Mutation Frequency in Redox-Impaired Escherichia coli Due to RelA- and RpoS-Mediated Repression of DNA Repair
- (2010) A. Singh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2010) Fang Chen et al. BMC EVOLUTIONARY BIOLOGY
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- (2010) Ivana Gudelj et al. ECOLOGY LETTERS
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- (2010) E. Van Derlinden et al. FOOD MICROBIOLOGY
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- (2010) Denise et al. Frontiers in Bioscience-Landmark
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- (2010) A. B. Reams et al. GENETICS
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- (2010) Lei Wang et al. Genome Biology and Evolution
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- (2010) Steffen R Poltak et al. ISME Journal
- RpoS, the Stress Response Sigma Factor, Plays a Dual Role in the Regulation of Escherichia coli's Error-Prone DNA Polymerase IV
- (2010) K. A. M. Storvik et al. JOURNAL OF BACTERIOLOGY
- Emergence of Pseudomonas aeruginosa Strains Producing High Levels of Persister Cells in Patients with Cystic Fibrosis
- (2010) L. R. Mulcahy et al. JOURNAL OF BACTERIOLOGY
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- (2010) Sarah M. Chiang et al. JOURNAL OF MOLECULAR EVOLUTION
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- (2010) Hidetada Hirakawa et al. MICROBIAL PATHOGENESIS
- Heterogeneity of Escherichia coli population by respiratory activity and membrane potential of cells during growth and long-term starvation
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- (2010) Janet L. Gibson et al. MOLECULAR MICROBIOLOGY
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- (2010) S. E. Broadbent et al. MOLECULAR MICROBIOLOGY
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- Functional organisation of Escherichia coli transcriptional regulatory network
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- The diffusive influx and carrier efflux have a strong effect on the bistability of the lac operon in Escherichia coli
- (2008) Jason T. Noel et al. JOURNAL OF THEORETICAL BIOLOGY
- Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12
- (2008) B. Spira et al. MICROBIOLOGY-SGM
- Host responses influence on the induction of lambda prophage
- (2008) Assaf Rokney et al. MOLECULAR MICROBIOLOGY
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- Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation
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- (2008) F. St-Pierre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2007) M. Lemonnier et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Robustness and evolvability: a paradox resolved
- (2007) A. Wagner PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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