Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime inPseudomonas putidamt-2 exposed tom-xylene

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2

(2012) Rafael Silva-Rocha et al.   ISME Journal

A GFP-lacZ Bicistronic Reporter System for Promoter Analysis in Environmental Gram-Negative Bacteria

(2012) Rafael Silva-Rocha et al.   PLoS One

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene

(2011) Rafael Silva-Rocha et al.   BMC Systems Biology

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

(2011) Rafael Silva-Rocha et al.   ENVIRONMENTAL MICROBIOLOGY

A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations

(2011) Rafael Silva-Rocha et al.   Molecular BioSystems

Noise and Robustness in Prokaryotic Regulatory Networks

(2010) Rafael Silva-Rocha et al.   Annual Review of Microbiology

Regulation of Alternative Sigma Factor Use

(2010) Sofia Österberg et al.   Annual Review of Microbiology

The Crc Global Regulator Inhibits thePseudomonas putidapWW0 Toluene/Xylene Assimilation Pathway by Repressing the Translation of Regulatory and Structural Genes

(2010) Renata Moreno et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE