The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973

GLASSgo – Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence

(2018) Steffen C. Lott et al.   Frontiers in Genetics

Redox crisis underlies conditional light–dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA

(2017) Spencer Diamond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Editorial: Biotechnology of Microalgae, Based on Molecular Biology and Biochemistry of Eukaryotic Algae and Cyanobacteria

(2017) Takashi Osanai et al.   Frontiers in Microbiology

The Response Regulator Slr1588 Regulates spsA But Is Not Crucial for Salt Acclimation of Synechocystis sp. PCC 6803

(2017) Kuo Song et al.   Frontiers in Microbiology

Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803

(2017) Michelle Liberton et al.   PLoS One

Identifying the Metabolic Differences of a Fast-Growth Phenotype in Synechococcus UTEX 2973

(2017) Thomas J. Mueller et al.   Scientific Reports

The potential of Synechococcus elongatus UTEX 2973 for sugar feedstock production

(2016) Kuo Song et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptional and posttranscriptional regulation of cyanobacterial photosynthesis

(2016) Annegret Wilde et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium Synechococcus elongatus UTEX 2973

(2016) Kristen E. Wendt et al.   Microbial Cell Factories

The Entner–Doudoroff pathway is an overlooked glycolytic route in cyanobacteria and plants

(2016) Xi Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq

(2016) Sun Young Choi et al.   Scientific Reports

mdRNA-Seq analysis of marine microbial communities from the northern Red Sea

(2016) Shengwei Hou et al.   Scientific Reports

Engineering cyanobacteria for direct biofuel production from CO 2

(2015) Philipp Savakis et al.   CURRENT OPINION IN BIOTECHNOLOGY

Regulatory small RNAs from the 3′ regions of bacterial mRNAs

(2015) Masatoshi Miyakoshi et al.   CURRENT OPINION IN MICROBIOLOGY

Circadian Rhythms in Cyanobacteria

(2015) Susan E. Cohen et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Essential Role of Acyl-ACP Synthetase in Acclimation of the CyanobacteriumSynechococcus elongatusStrain PCC 7942 to High-Light Conditions

(2015) Nobuyuki Takatani et al.   PLANT AND CELL PHYSIOLOGY

The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7

(2015) Stephan Klähn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The essential gene set of a photosynthetic organism

(2015) Benjamin E. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic engineering of cyanobacteria for the synthesis of commodity products

(2015) S. Andreas Angermayr et al.   TRENDS IN BIOTECHNOLOGY

Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2

(2015) Jingjie Yu et al.   Scientific Reports

Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria

(2015) Matthias Kopf et al.   Scientific Reports

Maximizing photosynthetic efficiency and culture productivity in cyanobacteria upon minimizing the phycobilisome light-harvesting antenna size

(2014) Henning Kirst et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803

(2014) Matthias Kopf et al.   DNA RESEARCH

Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity

(2014) Karsten Voigt et al.   ISME Journal

Daily Rhythms in the CyanobacteriumSynechococcus elongatusProbed by High-resolution Mass Spectrometry–based Proteomics Reveals a Small Defined Set of Cyclic Proteins

(2014) Ana C. L. Guerreiro et al.   MOLECULAR & CELLULAR PROTEOMICS

The Small Regulatory RNA SyR1/PsrR1 Controls Photosynthetic Functions in Cyanobacteria

(2014) J. Georg et al.   PLANT CELL

Phycobilisome-Deficient Strains of Synechocystis sp. PCC 6803 Have Reduced Size and Require Carbon-Limiting Conditions to Exhibit Enhanced Productivity

(2014) D. J. Lea-Smith et al.   PLANT PHYSIOLOGY

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation

(2014) Konstantinos Billis et al.   PLoS One

The primary transcriptome of the marine diazotroph Trichodesmium erythraeum IMS101

(2014) Ulrike Pfreundt et al.   Scientific Reports

Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism

(2014) Daniel Machado et al.   PLoS Computational Biology

Increased biomass production and glycogen accumulation in apcE gene deleted Synechocystis sp. PCC 6803

(2014) Ancy Joseph et al.   AMB Express

Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

(2014) Miguel A. Hernández-Prieto et al.   Frontiers in Genetics

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

RNA-Seq analysis and targeted mutagenesis for improved free fatty acid production in an engineered cyanobacterium

(2013) Anne M Ruffing   Biotechnology for Biofuels

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

The Antisense RNA As1_flv4 in the CyanobacteriumSynechocystissp. PCC 6803 Prevents Premature Expression of theflv4-2Operon upon Shift in Inorganic Carbon Supply

(2012) Marion Eisenhut et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Positive Regulation of psbA Gene Expression by cis-Encoded Antisense RNAs in Synechocystis sp. PCC 6803

(2012) I. Sakurai et al.   PLANT PHYSIOLOGY

Role of Rbp1 in the Acquired Chill-Light Tolerance of Cyanobacteria

(2011) X. Tan et al.   JOURNAL OF BACTERIOLOGY

Acclimation to high-light conditions in cyanobacteria: from gene expression to physiological responses

(2011) Masayuki Muramatsu et al.   JOURNAL OF PLANT RESEARCH

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Circadian transcriptional regulation by the posttranslational oscillator without de novo clock gene expression in Synechococcus

(2011) N. Hosokawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120

(2011) J. Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A high resolution map of a cyanobacterial transcriptome

(2011) Vikram Vijayan et al.   GENOME BIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Stress Sensors and Signal Transducers in Cyanobacteria

(2010) Dmitry A. Los et al.   SENSORS

Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria

(2009) Fernando Pinto et al.   BMC MOLECULAR BIOLOGY

Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

(2009) Jens Georg et al.   Molecular Systems Biology

Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus

(2009) H. Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology