Daily Rhythms in the CyanobacteriumSynechococcus elongatusProbed by High-resolution Mass Spectrometry–based Proteomics Reveals a Small Defined Set of Cyclic Proteins

Extensive Mass Spectrometry-based Analysis of the Fission Yeast Proteome

(2013) Jayantha Gunaratne et al.   MOLECULAR & CELLULAR PROTEOMICS

Ultradian metabolic rhythm in the diazotrophic cyanobacterium Cyanothece sp. ATCC 51142

(2013) J. Cerveny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity

(2013) Jeffrey H. Ringrose et al.   Nature Communications

Mechanism for 12 Hr Rhythm Generation by the Circadian Clock

(2013) Pål O. Westermark et al.   Cell Reports

RpaB, Another Response Regulator Operating Circadian Clock-dependent Transcriptional Regulation inSynechococcus elongatusPCC 7942

(2012) Mitsumasa Hanaoka et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Protease bias in absolute protein quantitation

(2012) Mao Peng et al.   NATURE METHODS

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Highly Coordinated Proteome Dynamics during Reprogramming of Somatic Cells to Pluripotency

(2012) Jenny Hansson et al.   Cell Reports

The Cyanobacterial Circadian System: From Biophysics to Bioevolution

(2011) Carl Hirschie Johnson et al.   Annual Review of Biophysics

Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles

(2011) Uma K Aryal et al.   BMC Systems Biology

Improving SRM Assay Development: A Global Comparison between Triple Quadrupole, Ion Trap, and Higher Energy CID Peptide Fragmentation Spectra

(2011) Erik L. de Graaf et al.   JOURNAL OF PROTEOME RESEARCH

General Statistical Modeling of Data from Protein Relative Expression Isobaric Tags

(2011) Florian P. Breitwieser et al.   JOURNAL OF PROTEOME RESEARCH

Dynamic Proteome Analysis of Cyanothece sp. ATCC 51142 under Constant Light

(2011) Uma K. Aryal et al.   JOURNAL OF PROTEOME RESEARCH

A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock

(2011) Christian Brettschneider et al.   Molecular Systems Biology

Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142

(2011) Jana Stöckel et al.   PLoS One

A high resolution map of a cyanobacterial transcriptome

(2011) Vikram Vijayan et al.   GENOME BIOLOGY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Elevated ATPase Activity of KaiC Applies a Circadian Checkpoint on Cell Division in Synechococcus elongatus

(2010) Guogang Dong et al.   CELL

RockerBox: Analysis and Filtering of Massive Proteomics Search Results

(2010) Henk W. P. van den Toorn et al.   JOURNAL OF PROTEOME RESEARCH

Global Proteomics Reveal an Atypical Strategy for Carbon/Nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations

(2010) Kimberly M. Wegener et al.   MOLECULAR & CELLULAR PROTEOMICS

Robust circadian clocks from coupled protein-modification and transcription-translation cycles

(2010) D. Zwicker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three major output pathways from the KaiABC-based oscillator cooperate to generate robust circadian kaiBC expression in cyanobacteria

(2010) Y. Taniguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coupling of a Core Post-Translational Pacemaker to a Slave Transcription/Translation Feedback Loop in a Circadian System

(2010) Ximing Qin et al.   PLOS BIOLOGY

Effect of continuous light on diurnal rhythms in Cyanothece sp. ATCC 51142

(2009) Thanura Elvitigala et al.   BMC GENOMICS

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

(2009) Johan Malmström et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus

(2009) H. Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oscillations in supercoiling drive circadian gene expression in cyanobacteria

(2009) Vikram Vijayan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH