Y-box proteins combine versatile cold shock domains and arginine-rich motifs (ARMs) for pleiotropic functions in RNA biology

Integrated structural biology to unravel molecular mechanisms of protein-RNA recognition

(2017) Andreas Schlundt et al.   METHODS

Comparative analysis of LIN28-RNA binding sites identified at single nucleotide resolution

(2017) Elizabeth Ransey et al.   RNA Biology

Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs

(2017) Shawn M. Lyons et al.   Nature Communications

Genome-Wide Analysis of RNA Secondary Structure

(2016) Philip C. Bevilacqua et al.   Annual Review of Genetics

The new (dis)order in RNA regulation

(2016) Aino I. Järvelin et al.   Cell Communication and Signaling

Position-dependent interactions of Y-box protein 2 (YBX2) with mRNA enable mRNA storage in round spermatids by repressing mRNA translation and blocking translation-dependent mRNA decay

(2016) Kenneth C. Kleene   MOLECULAR REPRODUCTION AND DEVELOPMENT

YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression

(2016) Shawn M. Lyons et al.   NUCLEIC ACIDS RESEARCH

RNA binding specificity of Ebola virus transcription factor VP30

(2016) Julia Schlereth et al.   RNA Biology

Topology of RNA–protein nucleobase–amino acid π–π interactions and comparison to analogous DNA–protein π–π contacts

(2016) Katie A. Wilson et al.   RNA

RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria

(2016) J. U. Guo et al.   SCIENCE

A structurally plastic ribonucleoprotein complex mediates post-transcriptional gene regulation in HIV-1

(2016) Jason D. Fernandes et al.   Wiley Interdisciplinary Reviews-RNA

Chemical Biology of Protein Arginine Modifications in Epigenetic Regulation

(2015) Jakob Fuhrmann et al.   CHEMICAL REVIEWS

mRNA and DNA selection via protein multimerization: YB-1 as a case study

(2015) Dmitry A. Kretov et al.   NUCLEIC ACIDS RESEARCH

G-quadruplexes and their regulatory roles in biology

(2015) Daniela Rhodes et al.   NUCLEIC ACIDS RESEARCH

Crystal structure reveals specific recognition of a G-quadruplex RNA by a β-turn in the RGG motif of FMRP

(2015) Nikita Vasilyev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compound Heterozygosity for Y Box Proteins Causes Sterility Due to Loss of Translational Repression

(2015) Elizabeth Snyder et al.   PLoS Genetics

The Y-Box Binding Protein 1 Suppresses Alzheimer’s Disease Progression in Two Animal Models

(2015) N. V. Bobkova et al.   PLoS One

Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains

(2014) C. A. Wilson et al.   GENETICS

Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins

(2014) Katharina Kramer et al.   NATURE METHODS

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

(2014) Michael J Moore et al.   Nature Protocols

G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments

(2014) Pavel Ivanov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immunocytochemical study of YB-1 nuclear distribution in different cell types

(2014) I.O. Bogolyubova et al.   TISSUE & CELL

YB-1: oncoprotein, prognostic marker and therapeutic target?

(2013) Annette Lasham et al.   BIOCHEMICAL JOURNAL

Essential role of conformational selection in ligand binding

(2013) Austin D. Vogt et al.   BIOPHYSICAL CHEMISTRY

The Arginine-Rich RNA-Binding Motif of HIV-1 Rev Is Intrinsically Disordered and Folds upon RRE Binding

(2013) Fabio Casu et al.   BIOPHYSICAL JOURNAL

Mechanisms of Lin28-Mediated miRNA and mRNA Regulation—A Structural and Functional Perspective

(2013) Florian Mayr et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Polyproline-II Helix in Proteins: Structure and Function

(2013) Alexei A. Adzhubei et al.   JOURNAL OF MOLECULAR BIOLOGY

Defining the RGG/RG Motif

(2013) Palaniraja Thandapani et al.   MOLECULAR CELL

A compendium of RNA-binding motifs for decoding gene regulation

(2013) Debashish Ray et al.   NATURE

Identification of LIN28B-bound mRNAs reveals features of target recognition and regulation

(2013) Robin Graf et al.   RNA Biology

YB-1 protein: functions and regulation

(2013) Dmitry N. Lyabin et al.   Wiley Interdisciplinary Reviews-RNA

An essential role for maternal control of Nodal signaling

(2013) Pooja Kumari et al.   eLife

Y-box-binding protein 1 (YB-1) and its functions

(2012) I. A. Eliseeva et al.   BIOCHEMISTRY-MOSCOW

The major mRNP protein YB-1: Structural and association properties in solution

(2012) Sergey G. Guryanov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

LIN28A Is a Suppressor of ER-Associated Translation in Embryonic Stem Cells

(2012) Jun Cho et al.   CELL

Dynamics in multi-domain protein recognition of RNA

(2012) Cameron D Mackereth et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Identification of Potential Regulatory Elements in the 5' and 3' UTRs of 12 Translationally Regulated mRNAs in Mammalian Spermatids by Comparative Genomics

(2012) T. A. Chowdhury et al.   JOURNAL OF ANDROLOGY

The Lin28 cold-shock domain remodels pre-let-7 microRNA

(2012) Florian Mayr et al.   NUCLEIC ACIDS RESEARCH

YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts

(2012) Wen-Juan Wei et al.   NUCLEIC ACIDS RESEARCH

YB-1 (YBX1) does not bind to Y/CCAAT boxes in vivo

(2012) D Dolfini et al.   ONCOGENE

Molecular Basis for Interaction of let-7 MicroRNAs with Lin28

(2011) Yunsun Nam et al.   CELL

Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability

(2011) Neelanjan Mukherjee et al.   MOLECULAR CELL

Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction

(2011) Anh Tuân Phan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Interplay between Y-box-binding protein 1 (YB-1) and poly(A) binding protein (PABP) in specific regulation ofYB-1mRNA translation

(2011) Dmitry N. Lyabin et al.   RNA Biology

RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution

(2011) R. Sachs et al.   RNA

Eukaryotic cold shock domain proteins: highly versatile regulators of gene expression

(2010) Marija Mihailovich et al.   BIOESSAYS

ZONAB Promotes Proliferation and Represses Differentiation of Proximal Tubule Epithelial Cells

(2010) W. R. Lima et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Conservation defines functional motifs in the squint/nodal-related 1 RNA dorsal localization element

(2010) Patrick C. Gilligan et al.   NUCLEIC ACIDS RESEARCH

RNA-binding specificity of Y-box protein 1

(2010) Jinjiang Dong et al.   RNA Biology

Translational Activation of Snail1 and Other Developmentally Regulated Transcription Factors by YB-1 Promotes an Epithelial-Mesenchymal Transition

(2009) Valentina Evdokimova et al.   CANCER CELL

A Solution to Limited Genomic Capacity: Using Adaptable Binding Surfaces to Assemble the Functional HIV Rev Oligomer on RNA

(2008) Matthew D. Daugherty et al.   MOLECULAR CELL