Deciphering composition and function of the root microbiome of a legume plant
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Deciphering composition and function of the root microbiome of a legume plant
Authors
Keywords
Clover, Root, Microbiome, 16S rRNA sequencing, Microcosm
Journal
Microbiome
Volume 5, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-01-17
DOI
10.1186/s40168-016-0220-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Networking in the Plant Microbiome
- (2016) Marcel G. A. van der Heijden et al. PLOS BIOLOGY
- Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
- (2015) Davide Bulgarelli et al. Cell Host & Microbe
- Microbiota and Host Nutrition across Plant and Animal Kingdoms
- (2015) Stéphane Hacquard et al. Cell Host & Microbe
- The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application
- (2015) Yun Kit Yeoh et al. ENVIRONMENTAL MICROBIOLOGY
- The Plant Microbiome at Work
- (2015) Klaus Schlaeppi et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Functional overlap of the Arabidopsis leaf and root microbiota
- (2015) Yang Bai et al. NATURE
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Structure, variation, and assembly of the root-associated microbiomes of rice
- (2015) Joseph Edwards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
- (2015) S. L. Lebeis et al. SCIENCE
- The Soil Microbiome Influences Grapevine-Associated Microbiota
- (2015) Iratxe Zarraonaindia et al. mBio
- Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
- (2015) Jose J. De Vega et al. Scientific Reports
- Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities
- (2015) Kristin Aleklett et al. PeerJ
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
- (2014) T.B.K. Reddy et al. NUCLEIC ACIDS RESEARCH
- Structure and Functions of the Bacterial Microbiota of Plants
- (2013) Davide Bulgarelli et al. Annual Review of Plant Biology
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana
- (2013) Natacha Bodenhausen et al. PLoS One
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Defining the core Arabidopsis thaliana root microbiome
- (2012) Derek S. Lundberg et al. NATURE
- Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
- (2012) Davide Bulgarelli et al. NATURE
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels
- (2012) Brant C. Faircloth et al. PLoS One
- The rhizosphere microbiome and plant health
- (2012) Roeland L. Berendsen et al. TRENDS IN PLANT SCIENCE
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- Picante: R tools for integrating phylogenies and ecology
- (2010) S. W. Kembel et al. BIOINFORMATICS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started