Tools and Databases of the KOMICS Web Portal for Preprocessing, Mining, and Dissemination of Metabolomics Data
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Tools and Databases of the KOMICS Web Portal for Preprocessing, Mining, and Dissemination of Metabolomics Data
Authors
Keywords
-
Journal
Biomed Research International
Volume 2014, Issue -, Pages 1-11
Publisher
Hindawi Limited
Online
2014-04-10
DOI
10.1155/2014/194812
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Mass spectrometry and metabolomics: past, present and future
- (2013) Warwick B. Dunn et al. Metabolomics
- A global approach to analysis and interpretation of metabolic data for plant natural product discovery
- (2013) Manhoi Hur et al. NATURAL PRODUCT REPORTS
- PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation
- (2013) Tetsuya Sakurai et al. PLANT AND CELL PHYSIOLOGY
- Recent Progress in the Development of Metabolome Databases for Plant Systems Biology
- (2013) Atsushi Fukushima et al. Frontiers in Plant Science
- An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values
- (2012) Nozomu Sakurai et al. BIOINFORMATICS
- MET-IDEA version 2.06; improved efficiency and additional functions for mass spectrometry-based metabolomics data processing
- (2012) Zhentian Lei et al. Metabolomics
- MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
- (2012) Kenneth Haug et al. NUCLEIC ACIDS RESEARCH
- HMDB 3.0—The Human Metabolome Database in 2013
- (2012) David S. Wishart et al. NUCLEIC ACIDS RESEARCH
- Dynamic metabolic changes during fruit maturation in Jatropha curcas L.
- (2012) Ryosuke Sano et al. Plant Biotechnology
- Development of KaPPA-View4 for omics studies on Jatropha and a database system KaPPA-Loader for construction of local omics databases
- (2012) Nozomu Sakurai et al. Plant Biotechnology
- MatchedIonsFinder: A software tool for revising alignment matrices of spectrograms from liquid chromatography-mass spectrometry
- (2012) Naoki Yamamoto et al. Plant Biotechnology
- Modern analytical techniques in metabolomics analysis
- (2011) Aihua Zhang et al. ANALYST
- Mass Spectrometry Strategies in Metabolomics
- (2011) Zhentian Lei et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Bioinformatics tools for cancer metabolomics
- (2011) Grigoriy Blekherman et al. Metabolomics
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2011) R. Caspi et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research
- (2011) Farit Mochamad Afendi et al. PLANT AND CELL PHYSIOLOGY
- ARTRA: a new database of the Arabidopsis transcriptome and gene-specific sequences for microarray probes and RNAi triggers
- (2011) Toshiharu Ohba et al. Plant Biotechnology
- DAGViz: a directed acyclic graph browser that supports analysis of Gene Ontology annotation
- (2011) Kentaro Yano et al. Plant Biotechnology
- Evaluation of Genetically Engineered Crops Using Transcriptomic, Proteomic, and Metabolomic Profiling Techniques
- (2011) A. E. Ricroch et al. PLANT PHYSIOLOGY
- Covering Chemical Diversity of Genetically-Modified Tomatoes Using Metabolomics for Objective Substantial Equivalence Assessment
- (2011) Miyako Kusano et al. PLoS One
- Computational mass spectrometry for metabolomics: Identification of metabolites and small molecules
- (2010) Steffen Neumann et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- LC–high resolution MS in environmental analysis: from target screening to the identification of unknowns
- (2010) Martin Krauss et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- CoP: a database for characterizing co-expressed gene modules with biological information in plants
- (2010) Y. Ogata et al. BIOINFORMATICS
- The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets
- (2010) Adam J Carroll et al. BMC BIOINFORMATICS
- MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
- (2010) Tomáš Pluskal et al. BMC BIOINFORMATICS
- MassBank: a public repository for sharing mass spectral data for life sciences
- (2010) Hisayuki Horai et al. JOURNAL OF MASS SPECTROMETRY
- Dealing with the unknown: Metabolomics and Metabolite Atlases
- (2010) Benjamin P. Bowen et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data
- (2010) Nozomu Sakurai et al. NUCLEIC ACIDS RESEARCH
- Reactome: a database of reactions, pathways and biological processes
- (2010) D. Croft et al. NUCLEIC ACIDS RESEARCH
- PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments
- (2010) P. Bais et al. PLANT PHYSIOLOGY
- Chemometrics in metabolomics—A review in human disease diagnosis
- (2009) Rasmus Madsen et al. ANALYTICA CHIMICA ACTA
- From differentiating metabolites to biomarkers
- (2009) Albert Koulman et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing
- (2009) Arjen Lommen ANALYTICAL CHEMISTRY
- Metabolomics for Functional Genomics, Systems Biology, and Biotechnology
- (2009) Kazuki Saito et al. Annual Review of Plant Biology
- PubChem: a public information system for analyzing bioactivities of small molecules
- (2009) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Web-based resources for mass-spectrometry-based metabolomics: A user’s guide
- (2009) Takayuki Tohge et al. PHYTOCHEMISTRY
- How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry
- (2009) Tobias Kind et al. PLoS One
- Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
- (2009) Janet Jansson et al. PLoS One
- Not just a grain of rice: the quest for quality
- (2009) Melissa A. Fitzgerald et al. TRENDS IN PLANT SCIENCE
- Computational strategies for metabolite identification in metabolomics
- (2009) David S Wishart Bioanalysis
- XCMS2: Processing Tandem Mass Spectrometry Data for Metabolite Identification and Structural Characterization
- (2008) H. P. Benton et al. ANALYTICAL CHEMISTRY
- High-Throughput Technique for Comprehensive Analysis of Japanese Green Tea Quality Assessment Using Ultra-performance Liquid Chromatography with Time-of-Flight Mass Spectrometry (UPLC/TOF MS)
- (2008) Wipawee Pongsuwan et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- KAGIANA: An Excel-Based Tool for Retrieving Summary Information on Arabidopsis Genes
- (2008) Y. Ogata et al. PLANT AND CELL PHYSIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now