Recent advances of metabolomics in plant biotechnology

A novel deconvolution method for modeling UDP-N-acetyl-D-glucosamine biosynthetic pathways based on 13C mass isotopologue profiles under non-steady-state conditions

(2011) Hunter NB Moseley et al.   BMC BIOLOGY

NMR-based stable isotope resolved metabolomics in systems biochemistry

(2011) Teresa W-M. Fan et al.   JOURNAL OF BIOMOLECULAR NMR

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function

(2011) Takayuki Tohge et al.   Nature Protocols

Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages inArabidopsis

(2011) Rachel E. Kerwin et al.   PLANT CELL

Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice

(2011) Miyako Kusano et al.   PLANT JOURNAL

Evaluation of Genetically Engineered Crops Using Transcriptomic, Proteomic, and Metabolomic Profiling Techniques

(2011) A. E. Ricroch et al.   PLANT PHYSIOLOGY

Covering Chemical Diversity of Genetically-Modified Tomatoes Using Metabolomics for Objective Substantial Equivalence Assessment

(2011) Miyako Kusano et al.   PLoS One

Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis

(2010) Doris Albinsky et al.   AMINO ACIDS

Profiling Polar and Semipolar Plant Metabolites throughout Extraction Processes Using a Combined Solution-State and High-Resolution Magic Angle Spinning NMR Approach

(2010) Yasuyo Sekiyama et al.   ANALYTICAL CHEMISTRY

A Strategy for the Determination of the Elemental Composition by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Based on Isotopic Peak Ratios

(2010) Daisuke Miura et al.   ANALYTICAL CHEMISTRY

Statistical Indices for Simultaneous Large-Scale Metabolite Detections for a Single NMR Spectrum

(2010) Eisuke Chikayama et al.   ANALYTICAL CHEMISTRY

Targeted Metabolomics for Biomarker Discovery

(2010) William J. Griffiths et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

An introduction to biological nuclear magnetic resonance spectroscopy

(2010) John H. F. Bothwell et al.   BIOLOGICAL REVIEWS

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis

(2010) Henning Redestig et al.   BMC BIOINFORMATICS

The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets

(2010) Adam J Carroll et al.   BMC BIOINFORMATICS

Metabolomics of Medicinal Plants: The Importance of Multivariate Analysis of Analytical Chemistry Data

(2010) Taketo Okada et al.   Current Computer-Aided Drug Design

The differential spatial distribution of secondary metabolites in Arabidopsis leaves reacting hypersensitively to Pseudomonas syringae pv. tomato is dependent on the oxidative burst

(2010) Clara Simon et al.   JOURNAL OF EXPERIMENTAL BOTANY

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

An inter-laboratory comparison demonstrates that [1H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection

(2010) Jane L. Ward et al.   Metabolomics

A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis

(2010) Ryo Nakabayashi et al.   New Biotechnology

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

(2010) Nozomu Sakurai et al.   NUCLEIC ACIDS RESEARCH

12-Oxo-Phytodienoic Acid–Glutathione Conjugate is Transported into the Vacuole in Arabidopsis

(2010) Naoko Ohkama-Ohtsu et al.   PLANT AND CELL PHYSIOLOGY

Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines

(2010) Anthony Schilmiller et al.   PLANT JOURNAL

Peroxisomal Hydrogen Peroxide Is Coupled to Biotic Defense Responses by ISOCHORISMATE SYNTHASE1 in a Daylength-Related Manner

(2010) S. Chaouch et al.   PLANT PHYSIOLOGY

From differentiating metabolites to biomarkers

(2009) Albert Koulman et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

13C Isotope-Labeled Metabolomes Allowing for Improved Compound Annotation and Relative Quantification in Liquid Chromatography-Mass Spectrometry-based Metabolomic Research

(2009) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

Metabolomic Profiling of Anionic Metabolites by Capillary Electrophoresis Mass Spectrometry

(2009) Tomoyoshi Soga et al.   ANALYTICAL CHEMISTRY

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Integrated omics approaches in plant systems biology

(2009) Atsushi Fukushima et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-wide Association Mapping

(2009) E. K. F. Chan et al.   GENETICS

Application of Metabolomics in the Analysis of Manufacturing Type of Pu-erh Tea and Composition Changes with Different Postfermentation Year

(2009) Kang Mo Ku et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Database Resources in Metabolomics: An Overview

(2009) Eden P. Go   Journal of Neuroimmune Pharmacology

Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism

(2009) Doris Albinsky et al.   Molecular Plant

Functional genomics for plant natural product biosynthesis

(2009) Keiko Yonekura-Sakakibara et al.   NATURAL PRODUCT REPORTS

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

(2009) Arun Sreekumar et al.   NATURE

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

(2009) Ryo Nakabayashi et al.   PHYTOCHEMISTRY

Web-based resources for mass-spectrometry-based metabolomics: A user’s guide

(2009) Takayuki Tohge et al.   PHYTOCHEMISTRY

Metabolome Analysis of Response to Oxidative Stress in Rice Suspension Cells Overexpressing Cell Death Suppressor Bax Inhibitor-1

(2009) Toshiki Ishikawa et al.   PLANT AND CELL PHYSIOLOGY

Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis

(2009) DanielJ. Kliebenstein   PLANT CELL

A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis

(2009) Y. Okazaki et al.   PLANT CELL

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

Identification of Defense Compounds in Barbarea vulgaris against the Herbivore Phyllotreta nemorum by an Ecometabolomic Approach

(2009) V. Kuzina et al.   PLANT PHYSIOLOGY

Integrated Metabolite and Transcript Profiling Identify a Biosynthetic Mechanism for Hispidol in Medicago truncatula Cell Cultures

(2009) M. A. Farag et al.   PLANT PHYSIOLOGY

Identification of Chlorogenic Acid as a Resistance Factor for Thrips in Chrysanthemum

(2009) K. A. Leiss et al.   PLANT PHYSIOLOGY

Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease

(2009) Janet Jansson et al.   PLoS One

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

(2009) A. Fukushima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement of internal body time by blood metabolomics

(2009) Y. Minami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How close is the bench to the bedside? Metabolic profiling in cancer research

(2009) Que N Van et al.   Genome Medicine

XCMS2: Processing Tandem Mass Spectrometry Data for Metabolite Identification and Structural Characterization

(2008) H. P. Benton et al.   ANALYTICAL CHEMISTRY

High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole13C Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas

(2008) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

Development of GCxGC/TOF-MS metabolomics for use in ecotoxicological studies with invertebrates

(2008) Kimberly Ralston-Hooper et al.   AQUATIC TOXICOLOGY

Towards de novo identification of metabolites by analyzing tandem mass spectra

(2008) S. Bocker et al.   BIOINFORMATICS

Time-resolved metabolomics reveals metabolic modulation in rice foliage

(2008) Shigeru Sato et al.   BMC Systems Biology

CE-MS in metabolomics

(2008) Rawi Ramautar et al.   ELECTROPHORESIS

Metabolomic and flux-balance analysis of age-related decline of hypoxia tolerance in Drosophila muscle tissue

(2008) Laurence Coquin et al.   Molecular Systems Biology

Metabolite identification via the Madison Metabolomics Consortium Database

(2008) Qiu Cui et al.   NATURE BIOTECHNOLOGY

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

(2008) Eugenio Butelli et al.   NATURE BIOTECHNOLOGY

HMDB: a knowledgebase for the human metabolome

(2008) D. S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Widely Targeted Metabolomics Based on Large-Scale MS/MS Data for Elucidating Metabolite Accumulation Patterns in Plants

(2008) Yuji Sawada et al.   PLANT AND CELL PHYSIOLOGY

Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome

(2008) H. C. Rowe et al.   PLANT CELL

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

Mode of Inheritance of Primary Metabolic Traits in Tomato

(2008) N. Schauer et al.   PLANT CELL

Metabolite annotations based on the integration of mass spectral information

(2008) Yoko Iijima et al.   PLANT JOURNAL

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics

(2008) Kaoru Urano et al.   PLANT JOURNAL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Quantitative 1H Nuclear Magnetic Resonance Metabolite Profiling as a Functional Genomics Platform to Investigate Alkaloid Biosynthesis in Opium Poppy

(2008) J. M. Hagel et al.   PLANT PHYSIOLOGY

Metabolome Analysis of Biosynthetic Mutants Reveals a Diversity of Metabolic Changes and Allows Identification of a Large Number of New Compounds in Arabidopsis

(2008) C. Bottcher et al.   PLANT PHYSIOLOGY

A  -Glutamyl Transpeptidase-Independent Pathway of Glutathione Catabolism to Glutamate via 5-Oxoproline in Arabidopsis

(2008) N. Ohkama-Ohtsu et al.   PLANT PHYSIOLOGY

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS

Rice Metabolomics

(2008) Akira Oikawa et al.   Rice

Metabolic profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry

(2007) Hideyuki Suzuki et al.   PHYTOCHEMISTRY

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE