Prediction of heme binding residues from protein sequences with integrative sequence profiles

HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information

(2011) Rong Liu et al.   BMC BIOINFORMATICS

Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties

(2011) Hui-Lin Huang et al.   BMC BIOINFORMATICS

Exploiting a Reduced Set of Weighted Average Features to Improve Prediction of DNA-Binding Residues from 3D Structures

(2011) Yi Xiong et al.   PLoS One

ATPsite: sequence-based prediction of ATP-binding residues

(2011) Ke Chen et al.   Proteome Science

Predicting protein–protein interactions from protein sequences using meta predictor

(2010) Jun-Feng Xia et al.   AMINO ACIDS

Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information

(2010) Jagat S Chauhan et al.   BMC BIOINFORMATICS

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information

(2010) Nitish K Mishra et al.   BMC BIOINFORMATICS

Identification of NAD interacting residues in proteins

(2010) Hifzur R Ansari et al.   BMC BIOINFORMATICS

Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information

(2010) Peng Chen et al.   BMC BIOINFORMATICS

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility

(2010) Jun-Feng Xia et al.   BMC BIOINFORMATICS

Computational Methods for the Prediction of Protein-Protein Interactions

(2010) Jun-Feng Xia et al.   PROTEIN AND PEPTIDE LETTERS

An accurate feature-based method for identifying DNA-binding residues on protein surfaces

(2010) Yi Xiong et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Heme proteins-Diversity in structural characteristics, function, and folding

(2010) Lorna J. Smith et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature

(2010) Xin Ma et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Identifying protein–protein interaction sites in transient complexes with temperature factor, sequence profile and accessible surface area

(2009) Rong Liu et al.   AMINO ACIDS

Identification of ATP binding residues of a protein from its primary sequence

(2009) Jagat S Chauhan et al.   BMC BIOINFORMATICS

Exploiting structural and topological information to improve prediction of RNA-protein binding sites

(2009) Stefan R Maetschke et al.   BMC BIOINFORMATICS

Computational identification of ubiquitylation sites from protein sequences

(2008) Chun-Wei Tung et al.   BMC BIOINFORMATICS

PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation

(2008) S. Montgomerie et al.   NUCLEIC ACIDS RESEARCH

Ligand preference and orientation in b- and c-type heme-binding proteins

(2008) Christian Fufezan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS