Random Forest-Based Protein Model Quality Assessment (RFMQA) Using Structural Features and Potential Energy Terms
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Random Forest-Based Protein Model Quality Assessment (RFMQA) Using Structural Features and Potential Energy Terms
Authors
Keywords
-
Journal
PLoS One
Volume 9, Issue 9, Pages e106542
Publisher
Public Library of Science (PLoS)
Online
2014-09-16
DOI
10.1371/journal.pone.0106542
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction
- (2013) Juyong Lee et al. PLoS One
- Protein structure modeling for CASP10 by multiple layers of global optimization
- (2013) Keehyoung Joo et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Assessment of the assessment: Evaluation of the model quality estimates in CASP10
- (2013) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Improved model quality assessment using ProQ2
- (2012) Arjun Ray et al. BMC BIOINFORMATICS
- PROTS-RF: A Robust Model for Predicting Mutation-Induced Protein Stability Changes
- (2012) Yunqi Li et al. PLoS One
- GOAP: A Generalized Orientation-Dependent, All-Atom Statistical Potential for Protein Structure Prediction
- (2011) Hongyi Zhou et al. BIOPHYSICAL JOURNAL
- A Sampling-Based Method for Ranking Protein Structural Models by Integrating Multiple Scores and Features
- (2011) Xiaohu Shi et al. CURRENT PROTEIN & PEPTIDE SCIENCE
- Evaluation of model quality predictions in CASP9
- (2011) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8
- (2010) Z. Wang et al. BIOINFORMATICS
- I-TASSER: a unified platform for automated protein structure and function prediction
- (2010) Ambrish Roy et al. Nature Protocols
- A series of PDB related databases for everyday needs
- (2010) R. P. Joosten et al. NUCLEIC ACIDS RESEARCH
- A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction
- (2010) Jian Zhang et al. PLoS One
- Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
- (2009) L. J. McGuffin et al. BIOINFORMATICS
- Prediction of DNA-binding residues from protein sequence information using random forests
- (2009) Liangjiang Wang et al. BMC GENOMICS
- Quality Assessment of Protein Structure Models
- (2009) Daisuke Kihara et al. CURRENT PROTEIN & PEPTIDE SCIENCE
- Prediction of global and local quality of CASP8 models by MULTICOM series
- (2009) Jianlin Cheng et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Prediction of global and local model quality in CASP8 using the ModFOLD server
- (2009) Liam J. McGuffin PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust
- (2009) Pascal Benkert et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Assessment of global and local model quality in CASP8 using Pcons and ProQ
- (2009) Per Larsson et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- I-TASSER: Fully automated protein structure prediction in CASP8
- (2009) Yang Zhang PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests
- (2009) Mile Šikić et al. PLoS Computational Biology
- The ModFOLD server for the quality assessment of protein structural models
- (2008) L. J. McGuffin BIOINFORMATICS
- Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions
- (2008) Yuedong Yang et al. PROTEIN SCIENCE
- Specific interactions for ab initio folding of protein terminal regions with secondary structures
- (2008) Yuedong Yang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Evaluating the absolute quality of a single protein model using structural features and support vector machines
- (2008) Zheng Wang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- FEATURE SELECTION IN VALIDATING MASS SPECTROMETRY DATABASE SEARCH RESULTS
- (2008) JIANWEN FANG et al. Journal of Bioinformatics and Computational Biology
- OPUS-PSP: An Orientation-dependent Statistical All-atom Potential Derived from Side-chain Packing
- (2007) Mingyang Lu et al. JOURNAL OF MOLECULAR BIOLOGY
- Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
- (2002) Hongyi Zhou et al. PROTEIN SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation