A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila

Dynamic patterning by the Drosophila pair-rule network reconciles long-germ and short-germ segmentation

(2017) Erik Clark   PLOS BIOLOGY

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

(2017) Berta Verd et al.   PLoS Computational Biology

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

(2016) Enrico Cannavò et al.   CURRENT BIOLOGY

Gap Gene Regulatory Dynamics Evolve along a Genotype Network

(2016) Anton Crombach et al.   MOLECULAR BIOLOGY AND EVOLUTION

Blastoderm segmentation inOncopeltus fasciatusand the evolution of insect segmentation mechanisms

(2016) Reut Stahi et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Critical Timing without a Timer for Embryonic Development

(2015) Daniel E. Tufcea et al.   BIOPHYSICAL JOURNAL

Changing cell behaviours during beetle embryogenesis correlates with slowing of segmentation

(2015) A. Nakamoto et al.   Nature Communications

Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers

(2015) Zeba Wunderlich et al.   Cell Reports

Maternal Co-ordinate Gene Regulation and Axis Polarity in the Scuttle Fly Megaselia abdita

(2015) Karl R. Wotton et al.   PLoS Genetics

Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita

(2015) Karl R Wotton et al.   eLife

A Local, Self-Organizing Reaction-Diffusion Model Can Explain Somite Patterning in Embryos

(2015) James Cotterell et al.   Cell Systems

Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae)

(2014) Anton Crombach et al.   BIOSYSTEMS

Classification of transient behaviours in a time-dependent toggle switch model

(2014) Berta Verd et al.   BMC Systems Biology

Spatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves

(2014) A. Ay et al.   DEVELOPMENT

Reversion of developmental mode in insects: evolution from long germband to short germband in the polyembrionic waspMacrocentrus cingulumBrischke

(2014) Élio Sucena et al.   EVOLUTION & DEVELOPMENT

Bioattractors: dynamical systems theory and the evolution of regulatory processes

(2014) Johannes Jaeger et al.   JOURNAL OF PHYSIOLOGY-LONDON

Morphogenesis at criticality

(2014) D. Krotov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caudal Regulates the Spatiotemporal Dynamics of Pair-Rule Waves in Tribolium

(2014) Ezzat El-Sherif et al.   PLoS Genetics

An analysis of segmentation dynamics throughout embryogenesis in the centipede Strigamia maritima

(2013) Carlo Brena et al.   BMC BIOLOGY

Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube

(2012) Nikolaos Balaskas et al.   CELL

Phenotypic models of evolution and development: geometry as destiny

(2012) Paul François et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

(2012) A. C. Oates et al.   DEVELOPMENT

A segmentation clock operating in blastoderm and germband stages of Tribolium development

(2012) E. El-Sherif et al.   DEVELOPMENT

The Inheritance of Process: A Dynamical Systems Approach

(2012) Johannes Jaeger et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

A gene regulatory motif that generates oscillatory or multiway switch outputs

(2012) J. Panovska-Griffiths et al.   Journal of the Royal Society Interface

Medium-Throughput Processing of Whole Mount In Situ Hybridisation Experiments into Gene Expression Domains

(2012) Anton Crombach et al.   PLoS One

Geometry, epistasis, and developmental patterning

(2012) F. Corson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Segmentation Clock with Two-Segment Periodicity in Insects

(2012) A. F. Sarrazin et al.   SCIENCE

A model of developmental evolution: selection, pleiotropy and compensation

(2012) Mihaela Pavlicev et al.   TRENDS IN ECOLOGY & EVOLUTION

Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit

(2012) Christian Schröter et al.   PLOS BIOLOGY

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network

(2012) Anton Crombach et al.   PLoS Computational Biology

Regulation of a duplicated locus: Drosophila sloppy paired is replete with functionally overlapping enhancers

(2011) Miki Fujioka et al.   DEVELOPMENTAL BIOLOGY

Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo

(2011) M. W. Perry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparisons of the embryonic development of Drosophila , Nasonia , and Tribolium

(2011) Jeremy A. Lynch et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Systems-level feedback in cell-cycle control

(2010) Béla Novák et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata

(2010) Mónica García-Solache et al.   DEVELOPMENTAL BIOLOGY

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

(2010) Nicolás Frankel et al.   NATURE

Size Regulation in the Segmentation ofDrosophila: Interacting Interfaces between Localized Domains of Gene Expression Ensure Robust Spatial Patterning

(2009) Sergei Vakulenko et al.   PHYSICAL REVIEW LETTERS

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

Gene Circuit Analysis of the Terminal Gap Gene huckebein

(2009) Maksat Ashyraliyev et al.   PLoS Computational Biology

Heads and tails: Evolution of antero-posterior patterning in insects

(2008) Miriam I. Rosenberg et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulative feedback in pattern formation: towards a general relativistic theory of positional information

(2008) J. Jaeger et al.   DEVELOPMENT

Delayed coupling theory of vertebrate segmentation

(2008) Luis G. Morelli et al.   HFSP Journal

FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution

(2008) A. Pisarev et al.   NUCLEIC ACIDS RESEARCH

The evolution of developmental gene networks: lessons from comparative studies on holometabolous insects

(2008) A. D Peel   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana

(2008) J. I. Pueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Drosophila segment determination morphome

(2007) Svetlana Surkova et al.   DEVELOPMENTAL BIOLOGY