Dynamic patterning by the Drosophila pair-rule network reconciles long-germ and short-germ segmentation

The Heidelberg Screen for Pattern Mutants of Drosophila: A Personal Account

(2016) Eric Wieschaus et al.   Annual Review of Cell and Developmental Biology

Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo

(2016) Ezzat El-Sherif et al.   CURRENT BIOLOGY

Toll Genes Have an Ancestral Role in Axis Elongation

(2016) Matthew A. Benton et al.   CURRENT BIOLOGY

Hunchback knockdown induces supernumerary segment formation in Bombyx

(2016) Hajime Nakao   DEVELOPMENTAL BIOLOGY

Gap Gene Regulatory Dynamics Evolve along a Genotype Network

(2016) Anton Crombach et al.   MOLECULAR BIOLOGY AND EVOLUTION

Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos

(2016) Jonathan Desponds et al.   PLoS Computational Biology

Predicting Ancestral Segmentation Phenotypes from Drosophila to Anopheles Using In Silico Evolution

(2016) Jeremy B. Rothschild et al.   PLoS Genetics

Odd-paired controls frequency doubling in Drosophila segmentation by altering the pair-rule gene regulatory network

(2016) Erik Clark et al.   eLife

Analyses of interactions among pair-rule genes and the gap gene Krüppel in Bombyx segmentation

(2015) Hajime Nakao   DEVELOPMENTAL BIOLOGY

Changing cell behaviours during beetle embryogenesis correlates with slowing of segmentation

(2015) A. Nakamoto et al.   Nature Communications

Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita

(2015) Karl R Wotton et al.   eLife

Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework

(2014) G. Tka ik et al.   GENETICS

A positional Toll receptor code directs convergent extension in Drosophila

(2014) Adam C. Paré et al.   NATURE

Dual mode of embryonic development is highlighted by expression and function of Nasonia pair-rule genes

(2014) Miriam I Rosenberg et al.   eLife

An analysis of segmentation dynamics throughout embryogenesis in the centipede Strigamia maritima

(2013) Carlo Brena et al.   BMC BIOLOGY

Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity

(2013) Shawn C. Little et al.   CELL

Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning

(2013) Hernan G. Garcia et al.   CURRENT BIOLOGY

Cell and tissue dynamics during Tribolium embryogenesis revealed by versatile fluorescence labeling approaches

(2013) M. A. Benton et al.   DEVELOPMENT

Deciphering the onychophoran ‘segmentation gene cascade’: Gene expression reveals limited involvement of pair rule gene orthologs in segmentation, but a highly conserved segment polarity gene network

(2013) Ralf Janssen et al.   DEVELOPMENTAL BIOLOGY

Evolution of the pair rule gene network: Insights from a centipede

(2013) Jack Green et al.   DEVELOPMENTAL BIOLOGY

The function of Notch signalling in segment formation in the crustacean Daphnia magna (Branchiopoda)

(2013) Bo Joakim Eriksson et al.   DEVELOPMENTAL BIOLOGY

Patterning and growth control by membrane-tethered Wingless

(2013) Cyrille Alexandre et al.   NATURE

Positional information, in bits

(2013) J. O. Dubuis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network

(2013) F. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How Cells Know Where They Are

(2013) A. D. Lander   SCIENCE

A System of Repressor Gradients Spatially Organizes the Boundaries of Bicoid-Dependent Target Genes

(2012) Hongtao Chen et al.   CELL

A segmentation clock operating in blastoderm and germband stages of Tribolium development

(2012) E. El-Sherif et al.   DEVELOPMENT

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Predictive computation of genomic logic processing functions in embryonic development

(2012) I. S. Peter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Segmentation Clock with Two-Segment Periodicity in Insects

(2012) A. F. Sarrazin et al.   SCIENCE

Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit

(2012) Christian Schröter et al.   PLOS BIOLOGY

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation

(2011) M. D. Schroeder et al.   DEVELOPMENT

Expression of myriapod pair rule gene orthologs

(2011) Ralf Janssen et al.   EvoDevo

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana

(2008) J. I. Pueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Drosophila segment determination morphome

(2007) Svetlana Surkova et al.   DEVELOPMENTAL BIOLOGY