Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit

The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub

(2012) A. Trofka et al.   DEVELOPMENT

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

(2012) A. C. Oates et al.   DEVELOPMENT

A Network of Broadly Expressed HLH Genes Regulates Tissue-Specific Cell Fates

(2011) Abhishek Bhattacharya et al.   CELL

Evolutionary plasticity of segmentation clock networks

(2011) A. J. Krol et al.   DEVELOPMENT

The clock and wavefront model revisited

(2011) Philip J. Murray et al.   JOURNAL OF THEORETICAL BIOLOGY

A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation

(2011) Susan D. Hester et al.   PLoS Computational Biology

Segment Number and Axial Identity in a Segmentation Clock Period Mutant

(2010) Christian Schröter et al.   CURRENT BIOLOGY

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

(2010) Polly M Fordyce et al.   NATURE BIOTECHNOLOGY

Random cell movement promotes synchronization of the segmentation clock

(2010) K. Uriu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Somitogenesis Clock-Wave Initiation Requires Differential Decay and Multiple Binding Sites for Clock Protein

(2010) Mark Campanelli et al.   PLoS Computational Biology

Expression of the oscillating geneher1is directly regulated by hairy/enhancer of split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock

(2009) Tim Brend et al.   DEVELOPMENTAL DYNAMICS

Traveling wave formation in vertebrate segmentation

(2009) Koichiro Uriu et al.   JOURNAL OF THEORETICAL BIOLOGY

Rates of in situ transcription and splicing in large human genes

(2009) Jarnail Singh et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Effects of nonlinear degradation of protein on the oscillatory dynamics in a simple gene regulatory network

(2009) Fengpan Zhang et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Experimental determination of the evolvability of a transcription factor

(2009) S. J. Maerkl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of zebrafish somitogenesis

(2008) Christian Schröter et al.   DEVELOPMENTAL DYNAMICS

Delayed coupling theory of vertebrate segmentation

(2008) Luis G. Morelli et al.   HFSP Journal

Molecular Titration and Ultrasensitivity in Regulatory Networks

(2008) Nicolas E. Buchler et al.   JOURNAL OF MOLECULAR BIOLOGY

Control of segment number in vertebrate embryos

(2008) Céline Gomez et al.   NATURE

An in vitro microfluidic approach to generating protein-interaction networks

(2008) Doron Gerber et al.   NATURE METHODS

Segmental patterning of the vertebrate embryonic axis

(2008) Mary-Lee Dequéant et al.   NATURE REVIEWS GENETICS

Design principles of biochemical oscillators

(2008) Béla Novák et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A Proposed Mechanism for the Interaction of the Segmentation Clock and the Determination Front in Somitogenesis

(2008) Moisés Santillán et al.   PLoS One