Classification of transient behaviours in a time-dependent toggle switch model

Quantifying Cell Fate Decisions for Differentiation and Reprogramming of a Human Stem Cell Network: Landscape and Biological Paths

(2013) Chunhe Li et al.   PLoS Computational Biology

Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube

(2012) Nikolaos Balaskas et al.   CELL

Phenotypic models of evolution and development: geometry as destiny

(2012) Paul François et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

(2012) A. C. Oates et al.   DEVELOPMENT

Quasi-potential landscape in complex multi-stable systems

(2012) J. X. Zhou et al.   Journal of the Royal Society Interface

Flickering gives early warning signals of a critical transition to a eutrophic lake state

(2012) Rong Wang et al.   NATURE

Approaching a state shift in Earth’s biosphere

(2012) Anthony D. Barnosky et al.   NATURE

Geometry, epistasis, and developmental patterning

(2012) F. Corson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Dynamical-Systems View of Stem Cell Biology

(2012) C. Furusawa et al.   SCIENCE

A Segmentation Clock with Two-Segment Periodicity in Insects

(2012) A. F. Sarrazin et al.   SCIENCE

Anticipating Critical Transitions

(2012) M. Scheffer et al.   SCIENCE

The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post-Darwinian biology?

(2011) Sui Huang   BIOESSAYS

A deterministic map of Waddington's epigenetic landscape for cell fate specification

(2011) Sudin Bhattacharya et al.   BMC Systems Biology

A General Model for Binary Cell Fate Decision Gene Circuits with Degeneracy: Indeterminacy and Switch Behavior in the Absence of Cooperativity

(2011) Mircea Andrecut et al.   PLoS One

Quantifying the Waddington landscape and biological paths for development and differentiation

(2011) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Resilience of Tropical Forest and Savanna to Critical Transitions

(2011) M. Hirota et al.   SCIENCE

The Potential Landscape of Genetic Circuits Imposes the Arrow of Time in Stem Cell Differentiation

(2010) Jin Wang et al.   BIOPHYSICAL JOURNAL

Reprogramming cell fates: reconciling rarity with robustness

(2009) Sui Huang   BIOESSAYS

Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol ε and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors

(2009) Tahir H Tahirov et al.   Biology Direct

Evolution of resource cycling in ecosystems and individuals

(2009) Anton Crombach et al.   BMC EVOLUTIONARY BIOLOGY

Stem Cell States, Fates, and the Rules of Attraction

(2009) Tariq Enver et al.   Cell Stem Cell

Epigenetic reprogramming and induced pluripotency

(2009) K. Hochedlinger et al.   DEVELOPMENT

Elite and stochastic models for induced pluripotent stem cell generation

(2009) Shinya Yamanaka   NATURE

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

Epigenetic dynamics of stem cells and cell lineage commitment: digging Waddington's canal

(2009) Myriam Hemberger et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

The segmentation cascade in the centipede Strigamia maritima: Involvement of the Notch pathway and pair-rule gene homologues

(2008) Ariel D. Chipman et al.   DEVELOPMENTAL BIOLOGY

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

(2008) Hannah H. Chang et al.   NATURE

Potential landscape and flux framework of nonequilibrium networks: Robustness, dissipation, and coherence of biochemical oscillations

(2008) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana

(2008) J. I. Pueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Evolvability in Gene Regulatory Networks

(2008) Anton Crombach et al.   PLoS Computational Biology

Multistable Decision Switches for Flexible Control of Epigenetic Differentiation

(2008) Raúl Guantes et al.   PLoS Computational Biology