Gap Gene Regulatory Dynamics Evolve along a Genotype Network

Making Sense of Transcription Networks

(2015) Trevor R. Sorrells et al.   CELL

Dynamics of gene circuits shapes evolvability

(2015) Alba Jiménez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A cysteine-clamp gene drives embryo polarity in the midge Chironomus

(2015) J. Klomp et al.   SCIENCE

Maternal Co-ordinate Gene Regulation and Axis Polarity in the Scuttle Fly Megaselia abdita

(2015) Karl R. Wotton et al.   PLoS Genetics

High-resolution gene expression data from blastoderm embryos of the scuttle fly Megaselia abdita

(2015) Karl R Wotton et al.   Scientific Data

Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae)

(2014) Anton Crombach et al.   BIOSYSTEMS

Bioattractors: dynamical systems theory and the evolution of regulatory processes

(2014) Johannes Jaeger et al.   JOURNAL OF PHYSIOLOGY-LONDON

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos

(2014) Damjan Cicin-Sain et al.   NUCLEIC ACIDS RESEARCH

A Staging Scheme for the Development of the Scuttle Fly Megaselia abdita

(2014) Karl R. Wotton et al.   PLoS One

Quantitative dynamics and increased variability of segmentation gene expression in the Drosophila Krüppel and knirps mutants

(2013) Svetlana Surkova et al.   DEVELOPMENTAL BIOLOGY

Adaptive dynamics under development-based genotype–phenotype maps

(2013) Isaac Salazar-Ciudad et al.   NATURE

A Comparative Analysis of Transcription Factor Expression during Metazoan Embryonic Development

(2013) Alicia N. Schep et al.   PLoS One

Uncovering a Dynamic Feature of the Transcriptional Regulatory Network for Anterior-Posterior Patterning in the Drosophila Embryo

(2013) Junbo Liu et al.   PLoS One

Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network

(2013) F. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster

(2013) Kolja Becker et al.   PLoS Computational Biology

Precision of Hunchback Expression in the Drosophila Embryo

(2012) Michael W. Perry et al.   CURRENT BIOLOGY

Phenotypic models of evolution and development: geometry as destiny

(2012) Paul François et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The Inheritance of Process: A Dynamical Systems Approach

(2012) Johannes Jaeger et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

A transcriptomic hourglass in plant embryogenesis

(2012) Marcel Quint et al.   NATURE

Medium-Throughput Processing of Whole Mount In Situ Hybridisation Experiments into Gene Expression Domains

(2012) Anton Crombach et al.   PLoS One

A model of developmental evolution: selection, pleiotropy and compensation

(2012) Mihaela Pavlicev et al.   TRENDS IN ECOLOGY & EVOLUTION

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network

(2012) Anton Crombach et al.   PLoS Computational Biology

Evolution of Gene Regulatory Networks Controlling Body Plan Development

(2011) Isabelle S. Peter et al.   CELL

Quantitative Variation in Autocrine Signaling and Pathway Crosstalk in the Caenorhabditis Vulval Network

(2011) Erika Hoyos et al.   CURRENT BIOLOGY

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

Maternal activation of gap genes in the hover fly Episyrphus

(2010) S. Lemke et al.   DEVELOPMENT

A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata

(2010) Mónica García-Solache et al.   DEVELOPMENTAL BIOLOGY

Catching the phylogenic history through the ontogenic hourglass: a phylogenomic analysis of Drosophila body segmentation genes

(2010) Amir Yassin et al.   EVOLUTION & DEVELOPMENT

An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients

(2010) James Cotterell et al.   Molecular Systems Biology

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Mutational robustness can facilitate adaptation

(2010) Jeremy A. Draghi et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

The evolution of hierarchical gene regulatory networks

(2009) Douglas H. Erwin et al.   NATURE REVIEWS GENETICS

Is Genetic Evolution Predictable?

(2009) D. L. Stern et al.   SCIENCE

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

Gene Circuit Analysis of the Terminal Gap Gene huckebein

(2009) Maksat Ashyraliyev et al.   PLoS Computational Biology

Evidence for a composite anterior determinant in the hover fly Episyrphus balteatus (Syrphidae), a cyclorrhaphan fly with an anterodorsal serosa anlage

(2008) S. Lemke et al.   DEVELOPMENT

Expression and regulation of caudal in the lower cyclorrhaphan fly Megaselia

(2008) Michael Stauber et al.   DEVELOPMENT GENES AND EVOLUTION

THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?

(2008) David L. Stern et al.   EVOLUTION

Microevolutionary support for a developmental hourglass: gene expression patterns shape sequence variation and divergence inDrosophila

(2008) Tami Cruickshank et al.   EVOLUTION & DEVELOPMENT

Neutrality and Robustness in Evo-Devo: Emergence of Lateral Inhibition

(2008) Andreea Munteanu et al.   PLoS Computational Biology

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution

(2008) Elhanan Borenstein et al.   PLoS Computational Biology

Evolution of Evolvability in Gene Regulatory Networks

(2008) Anton Crombach et al.   PLoS Computational Biology

Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

(2008) Emily E. Hare et al.   PLoS Genetics

Characterization of the Drosophila segment determination morphome

(2007) Svetlana Surkova et al.   DEVELOPMENTAL BIOLOGY

Is evolvability evolvable?

(2007) Massimo Pigliucci   NATURE REVIEWS GENETICS

Robustness and evolvability: a paradox resolved

(2007) A. Wagner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES