Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta

The role of the whitefly, Bemisia tabaci (Gennadius), and farmer practices in the spread of cassava brown streak ipomoviruses

(2017) Midatharahally N. Maruthi et al.   JOURNAL OF PHYTOPATHOLOGY

Molecular insights into Cassava brown streak virus susceptibility and resistance by profiling of the early host response

(2017) Ravi B. Anjanappa et al.   MOLECULAR PLANT PATHOLOGY

QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert

(2017) E. A. Masumba et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide Association Mapping of Correlated Traits in Cassava: Dry Matter and Total Carotenoid Content

(2017) Ismail Y. Rabbi et al.   Plant Genome

Prospects for Genomic Selection in Cassava Breeding

(2017) Marnin D. Wolfe et al.   Plant Genome

QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii

(2017) Inosters Nzuki et al.   Frontiers in Plant Science

A Virus-Derived Stacked RNAi Construct Confers Robust Resistance to Cassava Brown Streak Disease

(2017) Getu Beyene et al.   Frontiers in Plant Science

A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus

(2017) T. Amuge et al.   Scientific Reports

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Eleven years of breeding efforts to combat cassava brown streak disease

(2016) Robert Sezi Kawuki et al.   BREEDING SCIENCE

Genome-wide association mapping of provitamin A carotenoid content in cassava

(2016) Williams Esuma et al.   EUPHYTICA

Artificial microRNA-derived resistance to Cassava brown streak disease

(2016) Henry Wagaba et al.   JOURNAL OF VIROLOGICAL METHODS

Characterization of Brown Streak Virus–Resistant Cassava

(2016) Ravi B. Anjanappa et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity

(2016) Jessen V Bredeson et al.   NATURE BIOTECHNOLOGY

Analysis of Interactions Between Cassava Brown Streak Disease Symptom Types Facilitates the Determination of Varietal Responses and Yield Losses

(2016) I. L. Ndyetabula et al.   PLANT DISEASE

Genome-Wide Association and Prediction Reveals Genetic Architecture of Cassava Mosaic Disease Resistance and Prospects for Rapid Genetic Improvement

(2016) Marnin D. Wolfe et al.   Plant Genome

Cassava brown streak virus has a rapidly evolving genome: implications for virus speciation, variability, diagnosis and host resistance

(2016) Titus Alicai et al.   Scientific Reports

Identification and distribution of the NBS-LRR gene family in the Cassava genome

(2015) Roberto Lozano et al.   BMC GENOMICS

Cassava brown streak disease: a threat to food security in Africa

(2015) Basavaprabhu L. Patil et al.   JOURNAL OF GENERAL VIROLOGY

An atlas of genetic correlations across human diseases and traits

(2015) Brendan Bulik-Sullivan et al.   NATURE GENETICS

Cassava brown streak disease and the sustainability of a clean seed system

(2015) C. F. McQuaid et al.   PLANT PATHOLOGY

Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava

(2015) Hernán Ceballos et al.   THEORETICAL AND APPLIED GENETICS

Analyses of Twelve New Whole Genome Sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from East Africa: Diversity, Supercomputing and Evidence for Further Speciation

(2015) Joseph Ndunguru et al.   PLoS One

The Effects of Restriction-Enzyme Choice on Properties of Genotyping-by-Sequencing Libraries: A Study in Cassava ()

(2014) Martha T. Hamblin et al.   CROP SCIENCE

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Single Step, a general approach for genomic selection

(2014) Andres Legarra et al.   Livestock Science

Genome-wide prediction of three important traits in bread wheat

(2014) Gilles Charmet et al.   MOLECULAR BREEDING

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Transcriptional Response of Virus-Infected Cassava and Identification of Putative Sources of Resistance for Cassava Brown Streak Disease

(2014) M. N. Maruthi et al.   PLoS One

Field evaluation of selected cassava genotypes for cassava brown streak disease based on symptom expression and virus load

(2014) Tadeo Kaweesi et al.   Virology Journal

A global alliance declaring war on cassava viruses in Africa

(2014) James Legg et al.   Food Security

Relatedness and Genotype × Environment Interaction Affect Prediction Accuracies in Genomic Selection: A Study in Cassava

(2013) Delphine Ly et al.   CROP SCIENCE

Spatio-temporal patterns of genetic change amongst populations of cassava Bemisia tabaci whiteflies driving virus pandemics in East and Central Africa

(2013) James P. Legg et al.   VIRUS RESEARCH

Diallel analysis of field resistance to brown streak disease in cassava (Manihot esculenta Crantz) landraces from Tanzania

(2012) H. P. Kulembeka et al.   EUPHYTICA

I.4 Screening Experimental Designs for Quantitative Trait Loci, Association Mapping, Genotype-by Environment Interaction, and Other Investigations

(2012) Walter T. Federer et al.   Frontiers in Physiology

The Cassava Genome: Current Progress, Future Directions

(2012) Simon Prochnik et al.   Tropical Plant Biology

The VIRCA Project

(2012) Nigel J. Taylor et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Genetic variability of root peel thickness and its influence in extractable starch from cassava (Manihot esculenta Crantz) roots

(2011) Juan C. Pérez et al.   PLANT BREEDING

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Analysis of cassava brown streak viruses reveals the presence of distinct virus species causing cassava brown streak disease in East Africa

(2010) S. Winter et al.   JOURNAL OF GENERAL VIROLOGY

Transmission studies with Cassava brown streak Uganda virus (Potyviridae: Ipomovirus) and its interaction with abiotic and biotic factors in Nicotiana benthamiana

(2010) Emmanuel Ogwok et al.   JOURNAL OF VIROLOGICAL METHODS

Genetically distinct strains of Cassava brown streak virus in the Lake Victoria basin and the Indian Ocean coastal area of East Africa

(2009) D. R. Mbanzibwa et al.   ARCHIVES OF VIROLOGY

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

A comparison of analytical methods for genetic association studies

(2008) Alison A. Motsinger-Reif et al.   GENETIC EPIDEMIOLOGY

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION