Complete chloroplast genome of seven Fritillaria species, variable DNA markers identification and phylogenetic relationships within the genus

Plastid Phylogenomics Resolve Deep Relationships among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity

(2017) Ran Wei et al.   Genome Biology and Evolution

The Complete Chloroplast Genome Sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and Comparative Analysis with Other Fritillaria Species

(2017) Inkyu Park et al.   MOLECULES

Characterization of the complete chloroplast genome sequence of Lepidium meyenii (Brassicaceae)

(2017) Tao Zhou et al.   Conservation Genetics Resources

Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses

(2017) Yun-peng Du et al.   Scientific Reports

Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)

(2016) Sean V. Burke et al.   BMC PLANT BIOLOGY

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

(2016) Anna V. Williams et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Characterization of the complete chloroplast genome of two sister species of Pugionium (Brassicaceae)

(2016) Quanjun Hu et al.   Conservation Genetics Resources

Characterization of the complete chloroplast genome of two sister species of salt cress (Brassicaceae)

(2016) Huiying Shang et al.   Conservation Genetics Resources

Chloroplast genome structure in Ilex (Aquifoliaceae)

(2016) Xin Yao et al.   Scientific Reports

Conservation genetics and geographic patterns of genetic variation of the vulnerable officinal herb Fritillaria walujewii (Liliaceae)

(2015) Zhihao Su et al.   AUSTRALIAN JOURNAL OF BOTANY

Conservation genetics and geographic patterns of genetic variation of the endangered officinal herbFritillaria pallidiflora

(2015) Zhihao Su et al.   NORDIC JOURNAL OF BOTANY

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

(2015) Anna V. Williams et al.   PLoS One

A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions

(2015) Stephen R. Downie et al.   SYSTEMATIC BOTANY

Complete chloroplast genome sequence of pineapple (Ananas comosus)

(2015) K. Nashima et al.   Tree Genetics & Genomes

Chloroplast phylogenomics resolves key relationships in ferns

(2015) Jin-Mei Lu et al.   Journal of Systematics and Evolution

Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences

(2015) Peterson W. Wambugu et al.   Scientific Reports

Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes

(2015) Jeffery M. Saarela et al.   AoB Plants

Complete Chloroplast Genome of the Multifunctional Crop Globe Artichoke and Comparison with Other Asteraceae

(2015) Pasquale L. Curci et al.   PLoS One

Analyses of the Complete Genome and Gene Expression of Chloroplast of Sweet Potato [Ipomoea batata]

(2015) Lang Yan et al.   PLoS One

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family

(2014) Guillaume E. Martin et al.   ANNALS OF BOTANY

Phylogenetic relationship in Fritillaria spp. of Iran inferred from ribosomal ITS and chloroplast trnL-trnF sequence data

(2014) Mahmoud Khourang et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Plant DNA barcoding: from gene to genome

(2014) Xiwen Li et al.   BIOLOGICAL REVIEWS

Understanding the spectacular failure of DNA barcoding in willows (Salix): Does this result from a trans-specific selective sweep?

(2014) Diana M. Percy et al.   MOLECULAR ECOLOGY

Evolutionary relationships in the medicinally important genus Fritillaria L. (Liliaceae)

(2014) Peter D. Day et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Failure of DNA barcoding in discriminatingCalligonumspecies

(2014) Yan Li et al.   NORDIC JOURNAL OF BOTANY

Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids

(2014) Huei-Jiun Su et al.   PLoS One

Complete Chloroplast Genome Sequence of Poisonous and Medicinal Plant Datura stramonium: Organizations and Implications for Genetic Engineering

(2014) Yang Yang et al.   PLoS One

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Plastome sequences of two New World bamboos-Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)-extend phylogenomic understanding of Bambusoideae

(2012) Sean V. Burke et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata

(2012) Stephen H. Kazakoff et al.   PLoS One

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS