Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata

A Common View of the Opportunities, Challenges, and Research Actions for Pongamia in Australia

(2012) Helen T. Murphy et al.   BioEnergy Research

Transcriptome Characterization and Sequencing-Based Identification of Salt-Responsive Genes in Millettia pinnata, a Semi-Mangrove Plant

(2012) J. Huang et al.   DNA RESEARCH

The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats

(2011) Andrew J. Alverson et al.   PLoS One

Metabolic Adaptation in Transplastomic Plants Massively Accumulating Recombinant Proteins

(2011) Julia Bally et al.   PLoS One

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

(2010) Ben C Stöver et al.   BMC BIOINFORMATICS

Recombination and the maintenance of plant organelle genome stability

(2010) Alexandre Maréchal et al.   NEW PHYTOLOGIST

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

CURE-Chloroplast: A chloroplast C-to-U RNA editing predictor for seed plants

(2009) Pufeng Du et al.   BMC BIOINFORMATICS

The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships

(2009) S. Tangphatsornruang et al.   DNA RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Standardized and simplified life-cycle assessment (LCA) as a driver for more sustainable biofuels

(2009) Rainer Zah et al.   JOURNAL OF CLEANER PRODUCTION

Pongamia pinnata: An Untapped Resource for the Biofuels Industry of the Future

(2008) Paul T. Scott et al.   BioEnergy Research

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Prediction of C-to-U RNA editing sites in plant mitochondria using both biochemical and evolutionary information

(2008) Pufeng Du et al.   JOURNAL OF THEORETICAL BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic

(2008) Melanie Oey et al.   PLANT JOURNAL